miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5717 3' -55.7 NC_001806.1 + 89895 0.71 0.659849
Target:  5'- gCAGGGACCccGCgUUGcCGGCCGCCGGGg -3'
miRNA:   3'- -GUCCUUGG--UGgGAU-GCUGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 59844 0.71 0.659849
Target:  5'- -uGGAGCCaaggccauccugGCCCgcacgACGGCCcagGCCGGACg -3'
miRNA:   3'- guCCUUGG------------UGGGa----UGCUGG---UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 4722 0.71 0.670079
Target:  5'- -cGGGGCCuCCCguucGCGGCC-CCGGGCc -3'
miRNA:   3'- guCCUUGGuGGGa---UGCUGGuGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 133516 0.71 0.67926
Target:  5'- -cGGGGCCuuauggaggACgCCUGCGACCGCCuuaucuuGGACg -3'
miRNA:   3'- guCCUUGG---------UG-GGAUGCUGGUGG-------UCUG- -5'
5717 3' -55.7 NC_001806.1 + 53235 0.71 0.680278
Target:  5'- gGGGAuCCGCCCUAUuuucccccccgGGCCgcACCGGGCc -3'
miRNA:   3'- gUCCUuGGUGGGAUG-----------CUGG--UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 91446 0.71 0.680278
Target:  5'- cCAGGAAUUugCCgGCGAgCACCuGGCc -3'
miRNA:   3'- -GUCCUUGGugGGaUGCUgGUGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 58958 0.71 0.689424
Target:  5'- gUAGGAuuccauuaaguucGgCGCCCUGCagGACCACCuGGCa -3'
miRNA:   3'- -GUCCU-------------UgGUGGGAUG--CUGGUGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 2926 0.71 0.690438
Target:  5'- gCGGGccGCCGCCUccggGCGGCCggGCCGGGCc -3'
miRNA:   3'- -GUCCu-UGGUGGGa---UGCUGG--UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 75253 0.71 0.690438
Target:  5'- gCGGuGACgGCCCUgggcGCGGCCGCCAG-Cg -3'
miRNA:   3'- -GUCcUUGgUGGGA----UGCUGGUGGUCuG- -5'
5717 3' -55.7 NC_001806.1 + 71088 0.71 0.690438
Target:  5'- gGGGGACUACagCCU-CGGCCcccuggGCCAGACg -3'
miRNA:   3'- gUCCUUGGUG--GGAuGCUGG------UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 132330 0.7 0.700548
Target:  5'- uCGGGGACCuggucgagguguGCgaggugggCCUGCGGCCACgCGGGCa -3'
miRNA:   3'- -GUCCUUGG------------UG--------GGAUGCUGGUG-GUCUG- -5'
5717 3' -55.7 NC_001806.1 + 26847 0.7 0.7106
Target:  5'- -cGGAGCC-CCCcGCGACCcCCGcGACc -3'
miRNA:   3'- guCCUUGGuGGGaUGCUGGuGGU-CUG- -5'
5717 3' -55.7 NC_001806.1 + 24551 0.7 0.720585
Target:  5'- uCGGGGACCACCgacgccauggCgccCGGCgCGCCGGACu -3'
miRNA:   3'- -GUCCUUGGUGG----------Gau-GCUG-GUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 3800 0.7 0.740317
Target:  5'- aCGGcGGCCGCC--GCGugCGCCAGGCc -3'
miRNA:   3'- -GUCcUUGGUGGgaUGCugGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 20402 0.7 0.740317
Target:  5'- -cGGGACCgggggGCCCggggACGGCCAaCGGGCg -3'
miRNA:   3'- guCCUUGG-----UGGGa---UGCUGGUgGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 52511 0.7 0.740317
Target:  5'- --cGAGuCCAUCCUGCGGCUcguggcgucucGCCGGACg -3'
miRNA:   3'- gucCUU-GGUGGGAUGCUGG-----------UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 150911 0.7 0.740317
Target:  5'- cCAGGcACgGCCCgAUGACCGCCucGGCc -3'
miRNA:   3'- -GUCCuUGgUGGGaUGCUGGUGGu-CUG- -5'
5717 3' -55.7 NC_001806.1 + 37209 0.7 0.750045
Target:  5'- aAGGAugCAaugUCCUuaAUGuCCGCCAGACg -3'
miRNA:   3'- gUCCUugGU---GGGA--UGCuGGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 147024 0.7 0.750045
Target:  5'- gCAGGuagcgcgugaGGCCGCCCgcggggACGGCC-CCGGAa -3'
miRNA:   3'- -GUCC----------UUGGUGGGa-----UGCUGGuGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 7802 0.69 0.759669
Target:  5'- aCAGGGGCCA-UgUugGGCCGCCAcGCg -3'
miRNA:   3'- -GUCCUUGGUgGgAugCUGGUGGUcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.