miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5717 3' -55.7 NC_001806.1 + 39648 1.1 0.002446
Target:  5'- aCAGGAACCACCCUACGACCACCAGACg -3'
miRNA:   3'- -GUCCUUGGUGGGAUGCUGGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 9103 0.84 0.127651
Target:  5'- -cGGAGCCACCgaGCGGCCAgCCAGGCg -3'
miRNA:   3'- guCCUUGGUGGgaUGCUGGU-GGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 118752 0.78 0.318702
Target:  5'- gCGGGAauccccugGCCGCCCUgaugcGCGGCCGCCccGGACu -3'
miRNA:   3'- -GUCCU--------UGGUGGGA-----UGCUGGUGG--UCUG- -5'
5717 3' -55.7 NC_001806.1 + 115276 0.75 0.442001
Target:  5'- gGGGAugucACCGCCCUcauguACGACCacgGCCAGAg -3'
miRNA:   3'- gUCCU----UGGUGGGA-----UGCUGG---UGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 60604 0.75 0.451143
Target:  5'- cCGGGGGCCACCC--CGGCC-CCAGGu -3'
miRNA:   3'- -GUCCUUGGUGGGauGCUGGuGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 16154 0.74 0.488707
Target:  5'- uUAGGAGCUGCCgggagaccgCUGCGAUCugCGGGCg -3'
miRNA:   3'- -GUCCUUGGUGG---------GAUGCUGGugGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 26493 0.74 0.498328
Target:  5'- uCAGGAGCgCGCCC-GCGGCCGCCccGCc -3'
miRNA:   3'- -GUCCUUG-GUGGGaUGCUGGUGGucUG- -5'
5717 3' -55.7 NC_001806.1 + 19360 0.74 0.508032
Target:  5'- cCGGGGG--GCCCUACGGCCACC-GAUg -3'
miRNA:   3'- -GUCCUUggUGGGAUGCUGGUGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 129637 0.74 0.511936
Target:  5'- uGGGGACCgagcuccugcaggcuGCCCUGCGcCCGcCCGGGCc -3'
miRNA:   3'- gUCCUUGG---------------UGGGAUGCuGGU-GGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 95104 0.73 0.5376
Target:  5'- uCGGGAGCCACCUgGCGG-CGCUGGAUa -3'
miRNA:   3'- -GUCCUUGGUGGGaUGCUgGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 5944 0.73 0.567739
Target:  5'- -cGGGACCGCCCcaaggggGCGggGCCGCCGGGu -3'
miRNA:   3'- guCCUUGGUGGGa------UGC--UGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 44645 0.73 0.577885
Target:  5'- gAGGGACCGCCCUcgGCGuCgCGCCGGu- -3'
miRNA:   3'- gUCCUUGGUGGGA--UGCuG-GUGGUCug -5'
5717 3' -55.7 NC_001806.1 + 3364 0.72 0.598286
Target:  5'- cCGGGccccGGCCAgcCCCgggACGGCCGCCAGGu -3'
miRNA:   3'- -GUCC----UUGGU--GGGa--UGCUGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 100632 0.72 0.598286
Target:  5'- cCGGcGAucccggccugccGCCGCCgCU-CGGCCACCAGGCu -3'
miRNA:   3'- -GUC-CU------------UGGUGG-GAuGCUGGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 107288 0.72 0.608528
Target:  5'- gGGGGccgcgugcugACCACCCcgguCGuCCACCGGGCg -3'
miRNA:   3'- gUCCU----------UGGUGGGau--GCuGGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 30739 0.72 0.608528
Target:  5'- gCGGGGGCCGCCuCUuCcGCCGCCGGGg -3'
miRNA:   3'- -GUCCUUGGUGG-GAuGcUGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 96645 0.72 0.618788
Target:  5'- gCGGGccacGCCACCCUgcGCGAgCACCugcgGGACa -3'
miRNA:   3'- -GUCCu---UGGUGGGA--UGCUgGUGG----UCUG- -5'
5717 3' -55.7 NC_001806.1 + 28960 0.71 0.64857
Target:  5'- -uGGGugUuuCCCUGCGACCgagaccuGCCGGACa -3'
miRNA:   3'- guCCUugGu-GGGAUGCUGG-------UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 106317 0.71 0.649596
Target:  5'- aCGGcGAGCCACCCgaGCgGGCCGCguGAUa -3'
miRNA:   3'- -GUC-CUUGGUGGGa-UG-CUGGUGguCUG- -5'
5717 3' -55.7 NC_001806.1 + 20855 0.71 0.649596
Target:  5'- -cGGGACCGCCagagACaGACCGUCAGACg -3'
miRNA:   3'- guCCUUGGUGGga--UG-CUGGUGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.