Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5717 | 3' | -55.7 | NC_001806.1 | + | 52861 | 0.66 | 0.922911 |
Target: 5'- -cGGGACCcgACag-GCGACCGCCGGcgGCg -3' miRNA: 3'- guCCUUGG--UGggaUGCUGGUGGUC--UG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 3364 | 0.72 | 0.598286 |
Target: 5'- cCGGGccccGGCCAgcCCCgggACGGCCGCCAGGu -3' miRNA: 3'- -GUCC----UUGGU--GGGa--UGCUGGUGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 100632 | 0.72 | 0.598286 |
Target: 5'- cCGGcGAucccggccugccGCCGCCgCU-CGGCCACCAGGCu -3' miRNA: 3'- -GUC-CU------------UGGUGG-GAuGCUGGUGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 107288 | 0.72 | 0.608528 |
Target: 5'- gGGGGccgcgugcugACCACCCcgguCGuCCACCGGGCg -3' miRNA: 3'- gUCCU----------UGGUGGGau--GCuGGUGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 30739 | 0.72 | 0.608528 |
Target: 5'- gCGGGGGCCGCCuCUuCcGCCGCCGGGg -3' miRNA: 3'- -GUCCUUGGUGG-GAuGcUGGUGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 96645 | 0.72 | 0.618788 |
Target: 5'- gCGGGccacGCCACCCUgcGCGAgCACCugcgGGACa -3' miRNA: 3'- -GUCCu---UGGUGGGA--UGCUgGUGG----UCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 28960 | 0.71 | 0.64857 |
Target: 5'- -uGGGugUuuCCCUGCGACCgagaccuGCCGGACa -3' miRNA: 3'- guCCUugGu-GGGAUGCUGG-------UGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 106317 | 0.71 | 0.649596 |
Target: 5'- aCGGcGAGCCACCCgaGCgGGCCGCguGAUa -3' miRNA: 3'- -GUC-CUUGGUGGGa-UG-CUGGUGguCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 20855 | 0.71 | 0.649596 |
Target: 5'- -cGGGACCGCCagagACaGACCGUCAGACg -3' miRNA: 3'- guCCUUGGUGGga--UG-CUGGUGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 44645 | 0.73 | 0.577885 |
Target: 5'- gAGGGACCGCCCUcgGCGuCgCGCCGGu- -3' miRNA: 3'- gUCCUUGGUGGGA--UGCuG-GUGGUCug -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 5944 | 0.73 | 0.567739 |
Target: 5'- -cGGGACCGCCCcaaggggGCGggGCCGCCGGGu -3' miRNA: 3'- guCCUUGGUGGGa------UGC--UGGUGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 95104 | 0.73 | 0.5376 |
Target: 5'- uCGGGAGCCACCUgGCGG-CGCUGGAUa -3' miRNA: 3'- -GUCCUUGGUGGGaUGCUgGUGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 9103 | 0.84 | 0.127651 |
Target: 5'- -cGGAGCCACCgaGCGGCCAgCCAGGCg -3' miRNA: 3'- guCCUUGGUGGgaUGCUGGU-GGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 118752 | 0.78 | 0.318702 |
Target: 5'- gCGGGAauccccugGCCGCCCUgaugcGCGGCCGCCccGGACu -3' miRNA: 3'- -GUCCU--------UGGUGGGA-----UGCUGGUGG--UCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 115276 | 0.75 | 0.442001 |
Target: 5'- gGGGAugucACCGCCCUcauguACGACCacgGCCAGAg -3' miRNA: 3'- gUCCU----UGGUGGGA-----UGCUGG---UGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 60604 | 0.75 | 0.451143 |
Target: 5'- cCGGGGGCCACCC--CGGCC-CCAGGu -3' miRNA: 3'- -GUCCUUGGUGGGauGCUGGuGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 16154 | 0.74 | 0.488707 |
Target: 5'- uUAGGAGCUGCCgggagaccgCUGCGAUCugCGGGCg -3' miRNA: 3'- -GUCCUUGGUGG---------GAUGCUGGugGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 26493 | 0.74 | 0.498328 |
Target: 5'- uCAGGAGCgCGCCC-GCGGCCGCCccGCc -3' miRNA: 3'- -GUCCUUG-GUGGGaUGCUGGUGGucUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 19360 | 0.74 | 0.508032 |
Target: 5'- cCGGGGG--GCCCUACGGCCACC-GAUg -3' miRNA: 3'- -GUCCUUggUGGGAUGCUGGUGGuCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 129637 | 0.74 | 0.511936 |
Target: 5'- uGGGGACCgagcuccugcaggcuGCCCUGCGcCCGcCCGGGCc -3' miRNA: 3'- gUCCUUGG---------------UGGGAUGCuGGU-GGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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