Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5717 | 3' | -55.7 | NC_001806.1 | + | 52861 | 0.66 | 0.922911 |
Target: 5'- -cGGGACCcgACag-GCGACCGCCGGcgGCg -3' miRNA: 3'- guCCUUGG--UGggaUGCUGGUGGUC--UG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 80074 | 0.66 | 0.917274 |
Target: 5'- gCGGGAAucccucccuUCACCCUGgGACCccGCC-GACc -3' miRNA: 3'- -GUCCUU---------GGUGGGAUgCUGG--UGGuCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 32967 | 0.66 | 0.917274 |
Target: 5'- -cGGGGCC-CCUUGgGuCCGCCGGGg -3' miRNA: 3'- guCCUUGGuGGGAUgCuGGUGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 67740 | 0.66 | 0.893015 |
Target: 5'- -cGGAACCACCCaccccacagccaaacGCGGCUACCGc-- -3' miRNA: 3'- guCCUUGGUGGGa--------------UGCUGGUGGUcug -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 21234 | 0.66 | 0.898931 |
Target: 5'- gCGGGGACgACCCcgaccACGACC-CC-GACc -3' miRNA: 3'- -GUCCUUGgUGGGa----UGCUGGuGGuCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 57098 | 0.66 | 0.905282 |
Target: 5'- aAGG-GCCGCUCcacCGGCCGCCAGu- -3' miRNA: 3'- gUCCuUGGUGGGau-GCUGGUGGUCug -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 47554 | 0.66 | 0.898931 |
Target: 5'- ---cGGCCACCCgcgACGGCC-UCGGGCu -3' miRNA: 3'- guccUUGGUGGGa--UGCUGGuGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 3980 | 0.66 | 0.905282 |
Target: 5'- -uGGAGCCACCCca-GGCCuccgcguCCGGGg -3' miRNA: 3'- guCCUUGGUGGGaugCUGGu------GGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 46234 | 0.66 | 0.914952 |
Target: 5'- -cGGAgACCACCCgcggcaggaaauCGGCCcaGCCAGAa -3' miRNA: 3'- guCCU-UGGUGGGau----------GCUGG--UGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 52457 | 0.66 | 0.898931 |
Target: 5'- -cGGGGCCGCCCU--GGCCG-CGGAUc -3' miRNA: 3'- guCCUUGGUGGGAugCUGGUgGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 76562 | 0.66 | 0.891675 |
Target: 5'- gCGGGAggugcugGCCGCgC-GCGAgCGCCGGGCc -3' miRNA: 3'- -GUCCU-------UGGUGgGaUGCUgGUGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 28678 | 0.66 | 0.907757 |
Target: 5'- gAGGAGCCGCCCgccauauuugggggACG-CCGugGGACc -3' miRNA: 3'- gUCCUUGGUGGGa-------------UGCuGGUggUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 7281 | 0.66 | 0.892346 |
Target: 5'- cCGGGAGCCccggguUCC-GCGACCACCccgAGAa -3' miRNA: 3'- -GUCCUUGGu-----GGGaUGCUGGUGG---UCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 73081 | 0.66 | 0.913777 |
Target: 5'- -cGGAGCCuguccucgccucggcACCCccCGACCcgGCCGGGCc -3' miRNA: 3'- guCCUUGG---------------UGGGauGCUGG--UGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 27855 | 0.66 | 0.911397 |
Target: 5'- -cGGGGCCGCCCcGCGguggGCCugCcuccccugGGACg -3' miRNA: 3'- guCCUUGGUGGGaUGC----UGGugG--------UCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 64945 | 0.66 | 0.898931 |
Target: 5'- gAGGGACCACCggcguCGGCgC-CCGGGCc -3' miRNA: 3'- gUCCUUGGUGGgau--GCUG-GuGGUCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 105141 | 0.66 | 0.917274 |
Target: 5'- uCGGGGGCgGCCgUGCcGCC-CCAGGg -3' miRNA: 3'- -GUCCUUGgUGGgAUGcUGGuGGUCUg -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 28426 | 0.66 | 0.907757 |
Target: 5'- aCAGGGACCggggucGCCCUGuugggggucgccaugUGACCcCCuGACu -3' miRNA: 3'- -GUCCUUGG------UGGGAU---------------GCUGGuGGuCUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 60023 | 0.66 | 0.917274 |
Target: 5'- -cGGAGCCGCgCUGcCGuCCGCCGcGCc -3' miRNA: 3'- guCCUUGGUGgGAU-GCuGGUGGUcUG- -5' |
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5717 | 3' | -55.7 | NC_001806.1 | + | 119449 | 0.66 | 0.898931 |
Target: 5'- gCAGGAcgucacccgccGCCACCCggucCGAgCgcggACCGGGCg -3' miRNA: 3'- -GUCCU-----------UGGUGGGau--GCUgG----UGGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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