miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5717 3' -55.7 NC_001806.1 + 2926 0.71 0.690438
Target:  5'- gCGGGccGCCGCCUccggGCGGCCggGCCGGGCc -3'
miRNA:   3'- -GUCCu-UGGUGGGa---UGCUGG--UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 2993 0.66 0.922911
Target:  5'- gGGGAGgCGgCg-GCGGCCGCCAGcGCg -3'
miRNA:   3'- gUCCUUgGUgGgaUGCUGGUGGUC-UG- -5'
5717 3' -55.7 NC_001806.1 + 3141 0.67 0.871229
Target:  5'- -cGGGGCCcaggGCCC--CGGCgACCAGGCu -3'
miRNA:   3'- guCCUUGG----UGGGauGCUGgUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 3364 0.72 0.598286
Target:  5'- cCGGGccccGGCCAgcCCCgggACGGCCGCCAGGu -3'
miRNA:   3'- -GUCC----UUGGU--GGGa--UGCUGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 3800 0.7 0.740317
Target:  5'- aCGGcGGCCGCC--GCGugCGCCAGGCc -3'
miRNA:   3'- -GUCcUUGGUGGgaUGCugGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 3980 0.66 0.905282
Target:  5'- -uGGAGCCACCCca-GGCCuccgcguCCGGGg -3'
miRNA:   3'- guCCUUGGUGGGaugCUGGu------GGUCUg -5'
5717 3' -55.7 NC_001806.1 + 4722 0.71 0.670079
Target:  5'- -cGGGGCCuCCCguucGCGGCC-CCGGGCc -3'
miRNA:   3'- guCCUUGGuGGGa---UGCUGGuGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 4957 0.67 0.871229
Target:  5'- gCGGGGGCCcuCCCguc--CCGCCGGGCg -3'
miRNA:   3'- -GUCCUUGGu-GGGaugcuGGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 5944 0.73 0.567739
Target:  5'- -cGGGACCGCCCcaaggggGCGggGCCGCCGGGu -3'
miRNA:   3'- guCCUUGGUGGGa------UGC--UGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 7281 0.66 0.892346
Target:  5'- cCGGGAGCCccggguUCC-GCGACCACCccgAGAa -3'
miRNA:   3'- -GUCCUUGGu-----GGGaUGCUGGUGG---UCUg -5'
5717 3' -55.7 NC_001806.1 + 7704 0.68 0.840083
Target:  5'- uGGuGAugUugCCcGCgGACCACCGGGCc -3'
miRNA:   3'- gUC-CUugGugGGaUG-CUGGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 7802 0.69 0.759669
Target:  5'- aCAGGGGCCA-UgUugGGCCGCCAcGCg -3'
miRNA:   3'- -GUCCUUGGUgGgAugCUGGUGGUcUG- -5'
5717 3' -55.7 NC_001806.1 + 8686 0.68 0.840083
Target:  5'- uCAGGAGcgccccaaauCCGCCCgacagaACGGCCACgAGGa -3'
miRNA:   3'- -GUCCUU----------GGUGGGa-----UGCUGGUGgUCUg -5'
5717 3' -55.7 NC_001806.1 + 9103 0.84 0.127651
Target:  5'- -cGGAGCCACCgaGCGGCCAgCCAGGCg -3'
miRNA:   3'- guCCUUGGUGGgaUGCUGGU-GGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 12402 0.67 0.871229
Target:  5'- cCAGGcugguggcacaGACCcagagGCCC-ACGAgCACCAGGCc -3'
miRNA:   3'- -GUCC-----------UUGG-----UGGGaUGCUgGUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 12775 0.68 0.814702
Target:  5'- cCAGGAgacuGCCGCCCaccgcgcCGGCgAUCAGGCc -3'
miRNA:   3'- -GUCCU----UGGUGGGau-----GCUGgUGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 15470 0.67 0.868264
Target:  5'- uGGGAACaacggcacgcauggCGCCCUGCGACaugaugccaaaaaCACCAcaGACg -3'
miRNA:   3'- gUCCUUG--------------GUGGGAUGCUG-------------GUGGU--CUG- -5'
5717 3' -55.7 NC_001806.1 + 16154 0.74 0.488707
Target:  5'- uUAGGAGCUGCCgggagaccgCUGCGAUCugCGGGCg -3'
miRNA:   3'- -GUCCUUGGUGG---------GAUGCUGGugGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 19360 0.74 0.508032
Target:  5'- cCGGGGG--GCCCUACGGCCACC-GAUg -3'
miRNA:   3'- -GUCCUUggUGGGAUGCUGGUGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 20348 0.69 0.759669
Target:  5'- aGGcGGGCgGCCCUugGGCCGCCcGcCg -3'
miRNA:   3'- gUC-CUUGgUGGGAugCUGGUGGuCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.