miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5719 3' -55 NC_001806.1 + 151747 0.72 0.689622
Target:  5'- cCCGGGGggUGUGuuUUGGg---GGGGGCc -3'
miRNA:   3'- -GGUCCCa-ACGCu-AACCaagaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 151099 0.68 0.854938
Target:  5'- gCgGGGGUcGCGg--GGgUCgcgGGGGGCu -3'
miRNA:   3'- -GgUCCCAaCGCuaaCCaAGa--CCCCCG- -5'
5719 3' -55 NC_001806.1 + 149870 0.69 0.838958
Target:  5'- -gAGGGUcGCGGacggagGGUccCUGGGGGUc -3'
miRNA:   3'- ggUCCCAaCGCUaa----CCAa-GACCCCCG- -5'
5719 3' -55 NC_001806.1 + 148182 0.68 0.891257
Target:  5'- -uGGGGggGCGcg-GGgcgUCcggcgGGGGGCg -3'
miRNA:   3'- ggUCCCaaCGCuaaCCa--AGa----CCCCCG- -5'
5719 3' -55 NC_001806.1 + 147620 0.68 0.878095
Target:  5'- gCCAGGGacgagUGCGAcUGGggcacacggcgcgcgUCcGcGGGGCg -3'
miRNA:   3'- -GGUCCCa----ACGCUaACCa--------------AGaC-CCCCG- -5'
5719 3' -55 NC_001806.1 + 147389 0.65 0.95087
Target:  5'- -aGGGGggGaCGcgUGGa-CUGGGGGg -3'
miRNA:   3'- ggUCCCaaC-GCuaACCaaGACCCCCg -5'
5719 3' -55 NC_001806.1 + 146780 0.65 0.95087
Target:  5'- gCGGGGgc-CGucgGGUacUCgGGGGGCa -3'
miRNA:   3'- gGUCCCaacGCuaaCCA--AGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 144708 0.67 0.910358
Target:  5'- -uGGGGUUGCGGUUucuGUuucuuuaacccgUCUGGGGuGUu -3'
miRNA:   3'- ggUCCCAACGCUAAc--CA------------AGACCCC-CG- -5'
5719 3' -55 NC_001806.1 + 139096 0.69 0.838958
Target:  5'- uCCGGGGcUGCGAgaugcugaccGGcUCgccgcgcgGGGGGCu -3'
miRNA:   3'- -GGUCCCaACGCUaa--------CCaAGa-------CCCCCG- -5'
5719 3' -55 NC_001806.1 + 134519 0.72 0.659134
Target:  5'- aCGGGGUgGCG--UGGcUUC-GGGGGCa -3'
miRNA:   3'- gGUCCCAaCGCuaACC-AAGaCCCCCG- -5'
5719 3' -55 NC_001806.1 + 133821 0.73 0.62845
Target:  5'- aCCGGGGUgcugGCGGgaguaUGGggCgagGGGGGg -3'
miRNA:   3'- -GGUCCCAa---CGCUa----ACCaaGa--CCCCCg -5'
5719 3' -55 NC_001806.1 + 133148 0.68 0.862628
Target:  5'- gCGGGG--GCGAUgggGGUgcguUCUGGGGuGUc -3'
miRNA:   3'- gGUCCCaaCGCUAa--CCA----AGACCCC-CG- -5'
5719 3' -55 NC_001806.1 + 128885 0.69 0.830682
Target:  5'- -gGGGGgcGCGGagucGGgagauccUCUGGGGGCc -3'
miRNA:   3'- ggUCCCaaCGCUaa--CCa------AGACCCCCG- -5'
5719 3' -55 NC_001806.1 + 127395 0.68 0.854938
Target:  5'- gCCGGGGUUGaGGggGGg---GGGGGg -3'
miRNA:   3'- -GGUCCCAACgCUaaCCaagaCCCCCg -5'
5719 3' -55 NC_001806.1 + 124086 0.66 0.942166
Target:  5'- cCCGGGGcc-CGAagcuucgGGgggUCUGGGGGa -3'
miRNA:   3'- -GGUCCCaacGCUaa-----CCa--AGACCCCCg -5'
5719 3' -55 NC_001806.1 + 122934 0.66 0.927336
Target:  5'- gCCAGGGaccaCGGUcUGGUggcgcUUGGGGGUc -3'
miRNA:   3'- -GGUCCCaac-GCUA-ACCAa----GACCCCCG- -5'
5719 3' -55 NC_001806.1 + 117172 0.66 0.932518
Target:  5'- --uGGGUUGgGGUuucUGuGUUCacagGGGGGUg -3'
miRNA:   3'- gguCCCAACgCUA---AC-CAAGa---CCCCCG- -5'
5719 3' -55 NC_001806.1 + 105763 0.7 0.776586
Target:  5'- aCGGGGUcccccaUGgGGaaugguuUUGGUUCgUGGGGGUu -3'
miRNA:   3'- gGUCCCA------ACgCU-------AACCAAG-ACCCCCG- -5'
5719 3' -55 NC_001806.1 + 105101 0.66 0.939371
Target:  5'- gCAGGGcgGCGGgucguggcgggaggaUUGGggacagCUuucGGGGGCg -3'
miRNA:   3'- gGUCCCaaCGCU---------------AACCaa----GA---CCCCCG- -5'
5719 3' -55 NC_001806.1 + 103709 0.68 0.891257
Target:  5'- -gGGGGUUuggucgGCGggUGGUaaCUGGcGGGCc -3'
miRNA:   3'- ggUCCCAA------CGCuaACCAa-GACC-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.