miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5726 3' -63.2 NC_001806.1 + 17799 0.74 0.208437
Target:  5'- aCCgUGGGCCGUGCcgacuCGGUUUUUGCCCg -3'
miRNA:   3'- aGG-GCCCGGCAUGc----GCCGGAAGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 30912 0.74 0.213342
Target:  5'- uUCCgGGGCCGUccccgcGgGCGGCCUaCGCgCu -3'
miRNA:   3'- -AGGgCCCGGCA------UgCGCCGGAaGCGgG- -5'
5726 3' -63.2 NC_001806.1 + 49369 0.74 0.213342
Target:  5'- cCCCGGGCCcgAUGCGGCCcguaGCCa -3'
miRNA:   3'- aGGGCCCGGcaUGCGCCGGaag-CGGg -5'
5726 3' -63.2 NC_001806.1 + 131990 0.74 0.218345
Target:  5'- -aCCGGGCCG---GUGGCCcugUUCGCCCc -3'
miRNA:   3'- agGGCCCGGCaugCGCCGG---AAGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 87877 0.74 0.218345
Target:  5'- gCCCcGGCCGUucAUGCGGCCguaccCGUCCa -3'
miRNA:   3'- aGGGcCCGGCA--UGCGCCGGaa---GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 54647 0.74 0.223449
Target:  5'- cUCCUGGGCCGUAa-CGGCCgacuuagcCGCCg -3'
miRNA:   3'- -AGGGCCCGGCAUgcGCCGGaa------GCGGg -5'
5726 3' -63.2 NC_001806.1 + 36835 0.74 0.228653
Target:  5'- aCCCaGGCCGUACGCcgGGCCcaccccCGCCa -3'
miRNA:   3'- aGGGcCCGGCAUGCG--CCGGaa----GCGGg -5'
5726 3' -63.2 NC_001806.1 + 138677 0.74 0.230764
Target:  5'- gCCCGGGCCuggAUGCGacccagaggacccucGCCUaCGCCCg -3'
miRNA:   3'- aGGGCCCGGca-UGCGC---------------CGGAaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 136703 0.74 0.23937
Target:  5'- aCCgCGGGCCGccACGUGGCCgagcaGUCCg -3'
miRNA:   3'- aGG-GCCCGGCa-UGCGCCGGaag--CGGG- -5'
5726 3' -63.2 NC_001806.1 + 129671 0.73 0.250502
Target:  5'- gCCCGGGCCGccgaGCGGCCcgucuccggaCGCCUc -3'
miRNA:   3'- aGGGCCCGGCaug-CGCCGGaa--------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 136363 0.73 0.256227
Target:  5'- aCCCgGGGCCGgcgcgcucCGCGGCCUcCGCgaCCg -3'
miRNA:   3'- aGGG-CCCGGCau------GCGCCGGAaGCG--GG- -5'
5726 3' -63.2 NC_001806.1 + 30632 0.73 0.256227
Target:  5'- aCUCaGGGCCGgggggGCGCGGCCaggguggGCCCg -3'
miRNA:   3'- aGGG-CCCGGCa----UGCGCCGGaag----CGGG- -5'
5726 3' -63.2 NC_001806.1 + 22786 0.73 0.256227
Target:  5'- gCCCaGGCCGgccGCGUGGCCgucgagUGCCUg -3'
miRNA:   3'- aGGGcCCGGCa--UGCGCCGGaa----GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 114512 0.73 0.256227
Target:  5'- gCCgGGGCCGaccACGUGGCgaacgCGCCCa -3'
miRNA:   3'- aGGgCCCGGCa--UGCGCCGgaa--GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 23498 0.73 0.274045
Target:  5'- cCCCGuGGCCGUgucGCGcCGGCC--CGCCg -3'
miRNA:   3'- aGGGC-CCGGCA---UGC-GCCGGaaGCGGg -5'
5726 3' -63.2 NC_001806.1 + 121402 0.72 0.280201
Target:  5'- cCCCGGaGCCGgGCGCGugcugcGCCUUgGgCCCg -3'
miRNA:   3'- aGGGCC-CGGCaUGCGC------CGGAAgC-GGG- -5'
5726 3' -63.2 NC_001806.1 + 150862 0.72 0.280201
Target:  5'- uUCgCCGGGCCGgcucCGCgGGCCaggGCCCg -3'
miRNA:   3'- -AG-GGCCCGGCau--GCG-CCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 22879 0.72 0.286466
Target:  5'- gUCCCgGGGCUGgcCGgGGCCcg-GCCCg -3'
miRNA:   3'- -AGGG-CCCGGCauGCgCCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 98719 0.72 0.286466
Target:  5'- gUCCuGGCCGgccugGCgGCGGCCUucuUCGCCUu -3'
miRNA:   3'- aGGGcCCGGCa----UG-CGCCGGA---AGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 76834 0.72 0.293485
Target:  5'- gCCCGGGCCuccuacgcgacaggGCGCGcGCCUgcaggCGCUCu -3'
miRNA:   3'- aGGGCCCGGca------------UGCGC-CGGAa----GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.