miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5726 3' -63.2 NC_001806.1 + 5845 0.67 0.561231
Target:  5'- cCCCGGGCCcc-C-CGGUCc-CGCCCg -3'
miRNA:   3'- aGGGCCCGGcauGcGCCGGaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 6839 0.66 0.638042
Target:  5'- cUCCCGGGCU----GCuGCCcgaaaUCGCCCc -3'
miRNA:   3'- -AGGGCCCGGcaugCGcCGGa----AGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 7813 0.66 0.638042
Target:  5'- -gUUGGGCCGccacGCGCGGCUg--GUCCa -3'
miRNA:   3'- agGGCCCGGCa---UGCGCCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 10540 0.66 0.607167
Target:  5'- -aCCGaGGCCacUugGCGaGCCggguccuuuaugUCGCCCa -3'
miRNA:   3'- agGGC-CCGGc-AugCGC-CGGa-----------AGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 17247 0.75 0.193848
Target:  5'- cUCCCc-GCCGUGCGUGGCCUUacaaaucugcaagUGCCCc -3'
miRNA:   3'- -AGGGccCGGCAUGCGCCGGAA-------------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 17799 0.74 0.208437
Target:  5'- aCCgUGGGCCGUGCcgacuCGGUUUUUGCCCg -3'
miRNA:   3'- aGG-GCCCGGCAUGc----GCCGGAAGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 20103 0.67 0.542354
Target:  5'- -gCCGGcGCCGUcUGCGGgCgucggUCGCgCCg -3'
miRNA:   3'- agGGCC-CGGCAuGCGCCgGa----AGCG-GG- -5'
5726 3' -63.2 NC_001806.1 + 20183 0.69 0.432219
Target:  5'- cCCCgGGGCCG-GCGCGgagucgggcacggcGCCagugcucgcacUUCGCCCu -3'
miRNA:   3'- aGGG-CCCGGCaUGCGC--------------CGG-----------AAGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 20561 0.66 0.628388
Target:  5'- aUgCGGGgCGggGCGCGGaCCcaccCGCCCu -3'
miRNA:   3'- aGgGCCCgGCa-UGCGCC-GGaa--GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 21144 0.76 0.172612
Target:  5'- cCCCGGGCCccaccgACG-GGCCgcCGCCCa -3'
miRNA:   3'- aGGGCCCGGca----UGCgCCGGaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 21404 0.68 0.487155
Target:  5'- aUCCCGacGCCcgacccCGCGGCCUcgcCGCCCc -3'
miRNA:   3'- -AGGGCc-CGGcau---GCGCCGGAa--GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 21805 0.75 0.20363
Target:  5'- cCCCGGGCgG-ACGCcGCCccCGCCCg -3'
miRNA:   3'- aGGGCCCGgCaUGCGcCGGaaGCGGG- -5'
5726 3' -63.2 NC_001806.1 + 21892 0.69 0.418022
Target:  5'- cUCCgCGGGCCGcaucgaGCGCcGCCgg-GCCCg -3'
miRNA:   3'- -AGG-GCCCGGCa-----UGCGcCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 22079 0.74 0.207952
Target:  5'- cCCCGGggcggguGCUGUACgGCGGCCUgggcgacagcCGCCCg -3'
miRNA:   3'- aGGGCC-------CGGCAUG-CGCCGGAa---------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 22172 0.67 0.542354
Target:  5'- cCUCGGGCgCcccgGCGGCCgugugggCGCCCg -3'
miRNA:   3'- aGGGCCCG-GcaugCGCCGGaa-----GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 22786 0.73 0.256227
Target:  5'- gCCCaGGCCGgccGCGUGGCCgucgagUGCCUg -3'
miRNA:   3'- aGGGcCCGGCa--UGCGCCGGaa----GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 22879 0.72 0.286466
Target:  5'- gUCCCgGGGCUGgcCGgGGCCcg-GCCCg -3'
miRNA:   3'- -AGGG-CCCGGCauGCgCCGGaagCGGG- -5'
5726 3' -63.2 NC_001806.1 + 23073 0.67 0.561231
Target:  5'- gCCgUGGccGCCGUGCGCGccgugaGCCUggUCGCCg -3'
miRNA:   3'- aGG-GCC--CGGCAUGCGC------CGGA--AGCGGg -5'
5726 3' -63.2 NC_001806.1 + 23113 0.69 0.443264
Target:  5'- cCCUGGGCCccGCGCuGCCgcgggacccgCGCCUg -3'
miRNA:   3'- aGGGCCCGGcaUGCGcCGGaa--------GCGGG- -5'
5726 3' -63.2 NC_001806.1 + 23313 0.66 0.628388
Target:  5'- gCCCGGccgcCCGgagGCgGCGGCCcgCGaCCCc -3'
miRNA:   3'- aGGGCCc---GGCa--UG-CGCCGGaaGC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.