Results 21 - 40 of 219 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5726 | 3' | -63.2 | NC_001806.1 | + | 17799 | 0.74 | 0.208437 |
Target: 5'- aCCgUGGGCCGUGCcgacuCGGUUUUUGCCCg -3' miRNA: 3'- aGG-GCCCGGCAUGc----GCCGGAAGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 22079 | 0.74 | 0.207952 |
Target: 5'- cCCCGGggcggguGCUGUACgGCGGCCUgggcgacagcCGCCCg -3' miRNA: 3'- aGGGCC-------CGGCAUG-CGCCGGAa---------GCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 74535 | 0.76 | 0.155712 |
Target: 5'- cCCUGGGCCagcagcuggacagcgACGCGGCCUUuguuccugCGCCCg -3' miRNA: 3'- aGGGCCCGGca-------------UGCGCCGGAA--------GCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 42373 | 0.77 | 0.153107 |
Target: 5'- gCCUGcaGGUCGUACGUGGCCcccgCGCCCc -3' miRNA: 3'- aGGGC--CCGGCAUGCGCCGGaa--GCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 1559 | 0.77 | 0.135622 |
Target: 5'- -aCCGGGCCGggccgGCGCGcaccGCCUcgCGCCCc -3' miRNA: 3'- agGGCCCGGCa----UGCGC----CGGAa-GCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 1902 | 0.78 | 0.129156 |
Target: 5'- cCCCGGGCCGaacACGCGGCCcgagGCCa -3' miRNA: 3'- aGGGCCCGGCa--UGCGCCGGaag-CGGg -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 41847 | 0.79 | 0.11254 |
Target: 5'- cCCCGGGCgCGUACGUgcgagcgcgcagguaGGCCUUgGCCg -3' miRNA: 3'- aGGGCCCG-GCAUGCG---------------CCGGAAgCGGg -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 23466 | 0.81 | 0.076607 |
Target: 5'- cCCCGGGCCGccgcgGCGCaGGCC--CGCCCg -3' miRNA: 3'- aGGGCCCGGCa----UGCG-CCGGaaGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 79527 | 0.81 | 0.076607 |
Target: 5'- gUCCC-GGCCGaaagcACGCGGCCggCGCCCg -3' miRNA: 3'- -AGGGcCCGGCa----UGCGCCGGaaGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 93200 | 0.82 | 0.060994 |
Target: 5'- cCCCGGGCCGgguuugugUGCGCGGCCUcaaGCCUc -3' miRNA: 3'- aGGGCCCGGC--------AUGCGCCGGAag-CGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 120914 | 0.76 | 0.156841 |
Target: 5'- uUCCCGGGCCGgagcuCGCGGCa--CGCgCg -3' miRNA: 3'- -AGGGCCCGGCau---GCGCCGgaaGCGgG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 115320 | 0.76 | 0.164557 |
Target: 5'- gUCCCGGGCCuu-CGCGGCCa-CGgCCa -3' miRNA: 3'- -AGGGCCCGGcauGCGCCGGaaGCgGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 21805 | 0.75 | 0.20363 |
Target: 5'- cCCCGGGCgG-ACGCcGCCccCGCCCg -3' miRNA: 3'- aGGGCCCGgCaUGCGcCGGaaGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 85748 | 0.75 | 0.20363 |
Target: 5'- gUCCGGaGCC--GCGCGGCCacgUCGUCCg -3' miRNA: 3'- aGGGCC-CGGcaUGCGCCGGa--AGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 4433 | 0.75 | 0.20363 |
Target: 5'- gCCCGGGCgGgg-GCGGCgUcCGCCCg -3' miRNA: 3'- aGGGCCCGgCaugCGCCGgAaGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 53256 | 0.75 | 0.19892 |
Target: 5'- cCCCGGGCCGcacCG-GGCCccCGCCCc -3' miRNA: 3'- aGGGCCCGGCau-GCgCCGGaaGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 17247 | 0.75 | 0.193848 |
Target: 5'- cUCCCc-GCCGUGCGUGGCCUUacaaaucugcaagUGCCCc -3' miRNA: 3'- -AGGGccCGGCAUGCGCCGGAA-------------GCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 30180 | 0.75 | 0.184044 |
Target: 5'- cCCCGGGCCccccgcGUcCGCGGCCgcgucgggacccgcgCGCCCc -3' miRNA: 3'- aGGGCCCGG------CAuGCGCCGGaa-------------GCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 21144 | 0.76 | 0.172612 |
Target: 5'- cCCCGGGCCccaccgACG-GGCCgcCGCCCa -3' miRNA: 3'- aGGGCCCGGca----UGCgCCGGaaGCGGG- -5' |
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5726 | 3' | -63.2 | NC_001806.1 | + | 81342 | 0.76 | 0.168541 |
Target: 5'- aCgCGGGCCGcaaccAgGCGGCCggggcgUCGCCCg -3' miRNA: 3'- aGgGCCCGGCa----UgCGCCGGa-----AGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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