Results 1 - 20 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 3' | -45.3 | NC_001806.1 | + | 33723 | 0.66 | 0.999994 |
Target: 5'- --------uGCCGCuugugAGUGCGcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUG-----UCGCGUaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 31766 | 0.66 | 0.999994 |
Target: 5'- -----cAGAGCCGCGGCcCggGCuGCCu -3' miRNA: 3'- cuuuuuUUUUGGUGUCGcGuaCG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 74503 | 0.66 | 0.999994 |
Target: 5'- ------cGAGCUGCGGCGCuucGaCGCCc -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCGua-C-GCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 50905 | 0.66 | 0.999994 |
Target: 5'- -------cGGCCGCGGaGCAcguggaucUGCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUGUCgCGU--------ACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 109371 | 0.66 | 0.999994 |
Target: 5'- ---------cCCGCuuGGCGCccGCGCCc -3' miRNA: 3'- cuuuuuuuuuGGUG--UCGCGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 56881 | 0.66 | 0.999994 |
Target: 5'- --------cACCAgAGCGCGcGCuGCCu -3' miRNA: 3'- cuuuuuuuuUGGUgUCGCGUaCG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 93409 | 0.66 | 0.999994 |
Target: 5'- cGAGGAGAugaugGAGCUgACcGCGCGUGC-CCu -3' miRNA: 3'- -CUUUUUU-----UUUGG-UGuCGCGUACGcGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 96604 | 0.66 | 0.999994 |
Target: 5'- -----cAAAGCCGCcGCGCcc-CGCCg -3' miRNA: 3'- cuuuuuUUUUGGUGuCGCGuacGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 102267 | 0.66 | 0.999992 |
Target: 5'- uGAGGAAcgcGGCgGCGGCGCgGuuuaugucgucguggUGCGCCa -3' miRNA: 3'- -CUUUUUuu-UUGgUGUCGCG-U---------------ACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 147684 | 0.66 | 0.999991 |
Target: 5'- ----cGGGGGCCGgGGCGCGgggGCggGCCc -3' miRNA: 3'- cuuuuUUUUUGGUgUCGCGUa--CG--CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 147109 | 0.66 | 0.999991 |
Target: 5'- -------cGGCCcagaaGCAGCGCggGgGCCg -3' miRNA: 3'- cuuuuuuuUUGG-----UGUCGCGuaCgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 50332 | 0.66 | 0.999991 |
Target: 5'- ---cGGGAGGCCGCcuuccuggGGCGCGUGCuggauguGCUg -3' miRNA: 3'- cuuuUUUUUUGGUG--------UCGCGUACG-------CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 72347 | 0.66 | 0.999991 |
Target: 5'- ----cGGGAGCCAUGGUGUuuuucGUGCCg -3' miRNA: 3'- cuuuuUUUUUGGUGUCGCGua---CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 3163 | 0.66 | 0.999991 |
Target: 5'- ------cAGGCuCACGGCGCGcacgGCgGCCa -3' miRNA: 3'- cuuuuuuUUUG-GUGUCGCGUa---CG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 66802 | 0.66 | 0.999991 |
Target: 5'- --cGGGAGGAUCACGGCcgagcggggccgGCccggguggccgguGUGCGCCg -3' miRNA: 3'- cuuUUUUUUUGGUGUCG------------CG-------------UACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 100387 | 0.66 | 0.999991 |
Target: 5'- --------cGCCggGCGGCGCggGgGCCg -3' miRNA: 3'- cuuuuuuuuUGG--UGUCGCGuaCgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 132658 | 0.66 | 0.999991 |
Target: 5'- -----cGGGGCCGCGGCcGCuuaCGCCg -3' miRNA: 3'- cuuuuuUUUUGGUGUCG-CGuacGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 136322 | 0.66 | 0.99999 |
Target: 5'- --------cGCCAC-GCGCGUggagucgaaggccaGCGCCa -3' miRNA: 3'- cuuuuuuuuUGGUGuCGCGUA--------------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 132219 | 0.66 | 0.999987 |
Target: 5'- ---------cCCAguGCGCGUcCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUguCGCGUAcGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 72020 | 0.66 | 0.999987 |
Target: 5'- ----cAGGGGCgCGCGGCGgAcUGCGCUg -3' miRNA: 3'- cuuuuUUUUUG-GUGUCGCgU-ACGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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