miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 151544 0.67 0.311591
Target:  5'- uGGGCCCgGgcGGCCGGGGgCggcgGGGg -3'
miRNA:   3'- cCCCGGGgC--CCGGCCCCgGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 151263 0.73 0.111837
Target:  5'- cGGGCCCacgccgggcgguggGGGCCGGGGCCgg--GGGg -3'
miRNA:   3'- cCCCGGGg-------------CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 150886 0.69 0.206686
Target:  5'- aGGGCCCgggcaCGGGCCucGGGCCCCa---- -3'
miRNA:   3'- cCCCGGG-----GCCCGGc-CCCGGGGaaccc -5'
5727 5' -69.9 NC_001806.1 + 150670 0.67 0.318106
Target:  5'- cGGGCCCCGccgcGCUGGcGGCCgCCgaUGGc -3'
miRNA:   3'- cCCCGGGGCc---CGGCC-CCGG-GGa-ACCc -5'
5727 5' -69.9 NC_001806.1 + 149823 0.79 0.044147
Target:  5'- cGGGuacucGCUCCGGGgCGGGGCUCCaUGGGg -3'
miRNA:   3'- -CCC-----CGGGGCCCgGCCCCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 148779 0.67 0.305178
Target:  5'- gGGGGCgccCCCGcaacuGCCGGGGUcuUCCUcgcgGGGg -3'
miRNA:   3'- -CCCCG---GGGCc----CGGCCCCG--GGGAa---CCC- -5'
5727 5' -69.9 NC_001806.1 + 147784 0.74 0.096037
Target:  5'- gGGGGCCCgGGGCgGGGGgCggagCCUggcaUGGGc -3'
miRNA:   3'- -CCCCGGGgCCCGgCCCCgG----GGA----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 147704 0.71 0.162517
Target:  5'- cGGGCCCCGGaggcggcgcucgcacGCaCGGGGCCacggCCgcgcgGGGg -3'
miRNA:   3'- cCCCGGGGCC---------------CG-GCCCCGG----GGaa---CCC- -5'
5727 5' -69.9 NC_001806.1 + 147665 0.7 0.180537
Target:  5'- cGGGcggccggcuccGCCCCggGGGCCGGGGCgCg--GGGg -3'
miRNA:   3'- -CCC-----------CGGGG--CCCGGCCCCGgGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 147301 0.71 0.157362
Target:  5'- gGGGGUCCCGGGCCcacccuGGccgcgcccccccGGCCCUgagucggagGGGg -3'
miRNA:   3'- -CCCCGGGGCCCGG------CC------------CCGGGGaa-------CCC- -5'
5727 5' -69.9 NC_001806.1 + 147207 0.69 0.215625
Target:  5'- -cGGCCCCGGcGgCGGaagaggcGGCCCCcgcgGGGg -3'
miRNA:   3'- ccCCGGGGCC-CgGCC-------CCGGGGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 146188 0.66 0.366556
Target:  5'- -aGGCagCCCGGGCCGcGGCUCUgUGGu -3'
miRNA:   3'- ccCCG--GGGCCCGGCcCCGGGGaACCc -5'
5727 5' -69.9 NC_001806.1 + 144999 0.84 0.016375
Target:  5'- aGGGGCCCCGGcCCGGGGCCCCa---- -3'
miRNA:   3'- -CCCCGGGGCCcGGCCCCGGGGaaccc -5'
5727 5' -69.9 NC_001806.1 + 144967 0.71 0.157362
Target:  5'- uGGcGG-CCCGGcCCGGGGCCCCggcGGa -3'
miRNA:   3'- -CC-CCgGGGCCcGGCCCCGGGGaa-CCc -5'
5727 5' -69.9 NC_001806.1 + 144906 0.68 0.246583
Target:  5'- cGGGuUCCCGGcCCGGGGCCUgagaugaacaCUcGGGg -3'
miRNA:   3'- cCCC-GGGGCCcGGCCCCGGG----------GAaCCC- -5'
5727 5' -69.9 NC_001806.1 + 144821 0.68 0.246583
Target:  5'- aGGGGCCCCcgaccgcgGcGGUCcGGGCCCCguccGGa -3'
miRNA:   3'- -CCCCGGGG--------C-CCGGcCCCGGGGaa--CCc -5'
5727 5' -69.9 NC_001806.1 + 144602 0.69 0.23092
Target:  5'- cGGGCCCCccugcaGCCGGGGCggCCaaGGGg -3'
miRNA:   3'- cCCCGGGGcc----CGGCCCCGg-GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 143117 0.66 0.359332
Target:  5'- gGGGGCguggcugCCGGGa-GGGGCCgCggaUGGGc -3'
miRNA:   3'- -CCCCGg------GGCCCggCCCCGGgGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 138841 0.71 0.164772
Target:  5'- uGGGGCCgCGGGaCgGGGGCCCg----- -3'
miRNA:   3'- -CCCCGGgGCCC-GgCCCCGGGgaaccc -5'
5727 5' -69.9 NC_001806.1 + 135072 0.68 0.268825
Target:  5'- cGGGGaCgCgCCGGGCCGGaaaucGGCgCCgaccgGGGa -3'
miRNA:   3'- -CCCC-G-G-GGCCCGGCC-----CCGgGGaa---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.