miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 3' -53.3 NC_001806.1 + 147763 0.66 0.969341
Target:  5'- --cCCGACGCgGCCGCgGAC-GCGGg -3'
miRNA:   3'- uguGGUUGUGgUGGUGgUUGuCGUCg -5'
5731 3' -53.3 NC_001806.1 + 18855 0.66 0.969341
Target:  5'- cCGCCgGACACCugCAgCAaACGGCAccacguGCg -3'
miRNA:   3'- uGUGG-UUGUGGugGUgGU-UGUCGU------CG- -5'
5731 3' -53.3 NC_001806.1 + 6050 0.66 0.969341
Target:  5'- gGCGCCGugcccgacuccGCGCCgGCC-CCGGgGGCGGg -3'
miRNA:   3'- -UGUGGU-----------UGUGG-UGGuGGUUgUCGUCg -5'
5731 3' -53.3 NC_001806.1 + 108607 0.66 0.969341
Target:  5'- cCGCUAGCACCAgggaggUCACCccuguCAGCcGCg -3'
miRNA:   3'- uGUGGUUGUGGU------GGUGGuu---GUCGuCG- -5'
5731 3' -53.3 NC_001806.1 + 75708 0.66 0.969341
Target:  5'- cCACgAGCGCUggGCCGCCGACGuggaGGCc -3'
miRNA:   3'- uGUGgUUGUGG--UGGUGGUUGUcg--UCG- -5'
5731 3' -53.3 NC_001806.1 + 46428 0.66 0.968102
Target:  5'- uGCGCCGcggucggGCGCCugGCgGCCAugcaugcccggaugGCGGCGGUc -3'
miRNA:   3'- -UGUGGU-------UGUGG--UGgUGGU--------------UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 112612 0.66 0.967469
Target:  5'- -gACguGgGCCGCCACCuGCuggagaugcaggaggAGCAGCu -3'
miRNA:   3'- ugUGguUgUGGUGGUGGuUG---------------UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 112028 0.66 0.966178
Target:  5'- cCACCGAgGCCAUCGCCcugcucACGGgGGa -3'
miRNA:   3'- uGUGGUUgUGGUGGUGGu-----UGUCgUCg -5'
5731 3' -53.3 NC_001806.1 + 70387 0.66 0.966178
Target:  5'- uCGCCAACuggaggaCGCCAUCGugcuGCuGCGGCu -3'
miRNA:   3'- uGUGGUUGug-----GUGGUGGU----UGuCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 137494 0.66 0.966178
Target:  5'- -gACCAGCaACC-CCGCCucgcuggagGACcuGCAGCg -3'
miRNA:   3'- ugUGGUUG-UGGuGGUGG---------UUGu-CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 48033 0.66 0.966178
Target:  5'- aGCACCuuaACCucCCGCUggUGcGCAGCg -3'
miRNA:   3'- -UGUGGuugUGGu-GGUGGuuGU-CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 51830 0.66 0.966178
Target:  5'- -uGCgCGACGCCcuCCAUCGGauuCAGCAGUa -3'
miRNA:   3'- ugUG-GUUGUGGu-GGUGGUU---GUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 17028 0.66 0.966178
Target:  5'- cGCACCGugAgUGCCaACCAACgAGCAc- -3'
miRNA:   3'- -UGUGGUugUgGUGG-UGGUUG-UCGUcg -5'
5731 3' -53.3 NC_001806.1 + 68640 0.66 0.966178
Target:  5'- cCGCUGGCaaACCGUCACCAAgAGCuGCu -3'
miRNA:   3'- uGUGGUUG--UGGUGGUGGUUgUCGuCG- -5'
5731 3' -53.3 NC_001806.1 + 46163 0.66 0.966178
Target:  5'- cACACC--CACCACCGCCcccCGGgccccccgaaccCAGCg -3'
miRNA:   3'- -UGUGGuuGUGGUGGUGGuu-GUC------------GUCG- -5'
5731 3' -53.3 NC_001806.1 + 118767 0.66 0.962792
Target:  5'- cCGCCcugauGCGCgGCCGCCccggacucggGACGGCcGCa -3'
miRNA:   3'- uGUGGu----UGUGgUGGUGG----------UUGUCGuCG- -5'
5731 3' -53.3 NC_001806.1 + 3559 0.66 0.962792
Target:  5'- -gGCgGACAgCCGCC-CCAG-GGCGGCg -3'
miRNA:   3'- ugUGgUUGU-GGUGGuGGUUgUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 101713 0.66 0.962792
Target:  5'- -aGCCAAUgcguGCCugCugCGcCAGCAGg -3'
miRNA:   3'- ugUGGUUG----UGGugGugGUuGUCGUCg -5'
5731 3' -53.3 NC_001806.1 + 56913 0.66 0.962792
Target:  5'- cCGCCGACgACCAUCcCCAgggugccgacgaACAGgGGCc -3'
miRNA:   3'- uGUGGUUG-UGGUGGuGGU------------UGUCgUCG- -5'
5731 3' -53.3 NC_001806.1 + 51408 0.66 0.962792
Target:  5'- -gGCCGugGgCGCCuu--GCGGCAGCg -3'
miRNA:   3'- ugUGGUugUgGUGGugguUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.