miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 5' -63.9 NC_001806.1 + 4927 0.7 0.354314
Target:  5'- cCGGCgUCCuCGCCGG-CGuCGGugcccGCCGCGGn -3'
miRNA:   3'- -GCCG-AGG-GCGGUCaGC-GCU-----CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 114066 0.7 0.354314
Target:  5'- uGGUgCCCGCCuucUCGCGGGgccgcugcugcaCCGCGGg -3'
miRNA:   3'- gCCGaGGGCGGuc-AGCGCUC------------GGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 79058 0.7 0.354314
Target:  5'- gGaGCUCCCGUuuGUgGCGGGCgGCGa -3'
miRNA:   3'- gC-CGAGGGCGguCAgCGCUCGgCGCc -5'
5731 5' -63.9 NC_001806.1 + 106768 0.7 0.354314
Target:  5'- aCGGCUCCgCGCUGGaCGCcuccGCCGCGu -3'
miRNA:   3'- -GCCGAGG-GCGGUCaGCGcu--CGGCGCc -5'
5731 5' -63.9 NC_001806.1 + 94284 0.7 0.354314
Target:  5'- gCGGCUCCUgGgCAGccuggagacguUCGCGA-CCGCGGg -3'
miRNA:   3'- -GCCGAGGG-CgGUC-----------AGCGCUcGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 123817 0.7 0.363984
Target:  5'- aCGGgUCCCGCCAccgauccggccucCGCGAGCggcuucgCGCGGg -3'
miRNA:   3'- -GCCgAGGGCGGUca-----------GCGCUCG-------GCGCC- -5'
5731 5' -63.9 NC_001806.1 + 146845 0.7 0.369266
Target:  5'- gCGGCUCCaGCCGGggacCGCGGcCCGCa- -3'
miRNA:   3'- -GCCGAGGgCGGUCa---GCGCUcGGCGcc -5'
5731 5' -63.9 NC_001806.1 + 84052 0.7 0.379213
Target:  5'- cCGGCaccCCCGCCgucugggAGUCGgGGccccagcugcgcgcuGCCGCGGa -3'
miRNA:   3'- -GCCGa--GGGCGG-------UCAGCgCU---------------CGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 3002 0.7 0.384643
Target:  5'- gCGGCggCCGCCAG-CGCGucGGCgGCGu -3'
miRNA:   3'- -GCCGagGGCGGUCaGCGC--UCGgCGCc -5'
5731 5' -63.9 NC_001806.1 + 4327 0.7 0.384643
Target:  5'- cCGGC-CaCCGCCg--CGCGGGCCcgGCGGc -3'
miRNA:   3'- -GCCGaG-GGCGGucaGCGCUCGG--CGCC- -5'
5731 5' -63.9 NC_001806.1 + 100378 0.69 0.400439
Target:  5'- -aGCUCCCgucGCCGGgcggCGCGggGGCCGgGGu -3'
miRNA:   3'- gcCGAGGG---CGGUCa---GCGC--UCGGCgCC- -5'
5731 5' -63.9 NC_001806.1 + 132076 0.69 0.400439
Target:  5'- gGGCccgCCCGCCGccccUCGCGccgcucuccuGGUCGCGGa -3'
miRNA:   3'- gCCGa--GGGCGGUc---AGCGC----------UCGGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 37782 0.69 0.408491
Target:  5'- -cGCUCCgggGCCGGggCGCGGGgguCCGCGGg -3'
miRNA:   3'- gcCGAGGg--CGGUCa-GCGCUC---GGCGCC- -5'
5731 5' -63.9 NC_001806.1 + 27279 0.69 0.416643
Target:  5'- uCGGCggCCGCCAG-CGCGgcggGGCC-CGGc -3'
miRNA:   3'- -GCCGagGGCGGUCaGCGC----UCGGcGCC- -5'
5731 5' -63.9 NC_001806.1 + 50080 0.69 0.424894
Target:  5'- aCGGCguugcgUCCCGUCGGggcCGCG-GCCGUGc -3'
miRNA:   3'- -GCCG------AGGGCGGUCa--GCGCuCGGCGCc -5'
5731 5' -63.9 NC_001806.1 + 30301 0.69 0.424894
Target:  5'- cCGGCcgCCCGCCccgcGGaCGCGcGCCGUGu -3'
miRNA:   3'- -GCCGa-GGGCGG----UCaGCGCuCGGCGCc -5'
5731 5' -63.9 NC_001806.1 + 2702 0.69 0.428221
Target:  5'- gGGCUgCCGCCgccagccgcccagggGGUCG-GGGCCcucgGCGGg -3'
miRNA:   3'- gCCGAgGGCGG---------------UCAGCgCUCGG----CGCC- -5'
5731 5' -63.9 NC_001806.1 + 41694 0.69 0.432402
Target:  5'- gCGGCgugccgCCCGCCGuGUCcuccccgggacugGCGGGCgcaaaCGCGGg -3'
miRNA:   3'- -GCCGa-----GGGCGGU-CAG-------------CGCUCG-----GCGCC- -5'
5731 5' -63.9 NC_001806.1 + 4208 0.69 0.433241
Target:  5'- aCGGCUcCCCGCUGacguacccGUCGCGAuaGCgCGCGu -3'
miRNA:   3'- -GCCGA-GGGCGGU--------CAGCGCU--CG-GCGCc -5'
5731 5' -63.9 NC_001806.1 + 150970 0.69 0.433241
Target:  5'- uCGGCccgCUCGCgGGcCcaCGAGCCGCGGc -3'
miRNA:   3'- -GCCGa--GGGCGgUCaGc-GCUCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.