miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 119479 0.69 0.696009
Target:  5'- -aGC-GCGGACcggGCGUGCgGCCUGUg -3'
miRNA:   3'- aaCGuCGUCUGa--UGCAUGgCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 117867 0.71 0.553415
Target:  5'- -cGCAGCGGGCgaugucgGCGgggGCCgaGCCCGUg -3'
miRNA:   3'- aaCGUCGUCUGa------UGCa--UGG--CGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 116820 0.66 0.819239
Target:  5'- aUGCAG-AGugUcacGCGggagGCCGCCCaGCUc -3'
miRNA:   3'- aACGUCgUCugA---UGCa---UGGCGGG-CGG- -5'
5732 5' -57.3 NC_001806.1 + 113989 0.67 0.801676
Target:  5'- -aGCcGCGGACgccGCGgaugACCGgCCGCa -3'
miRNA:   3'- aaCGuCGUCUGa--UGCa---UGGCgGGCGg -5'
5732 5' -57.3 NC_001806.1 + 111244 0.73 0.447507
Target:  5'- -gGCGGCGGACaGCuuUGCCGCCUcuGCCa -3'
miRNA:   3'- aaCGUCGUCUGaUGc-AUGGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 110189 0.72 0.52359
Target:  5'- -aGCAcGCGGACUcguccucguGCGUGCCGCaCGCg -3'
miRNA:   3'- aaCGU-CGUCUGA---------UGCAUGGCGgGCGg -5'
5732 5' -57.3 NC_001806.1 + 108771 0.77 0.262126
Target:  5'- -cGCAGCAGA--GCGUGCUGUCgGCCu -3'
miRNA:   3'- aaCGUCGUCUgaUGCAUGGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 108546 0.7 0.614348
Target:  5'- gUGCGGCuGGCcGCGcccGCCGCuCCGCg -3'
miRNA:   3'- aACGUCGuCUGaUGCa--UGGCG-GGCGg -5'
5732 5' -57.3 NC_001806.1 + 107384 0.71 0.533468
Target:  5'- gUGCAGCGGGa-ACG---CGCCCGCCg -3'
miRNA:   3'- aACGUCGUCUgaUGCaugGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 105318 0.69 0.675741
Target:  5'- aUGCAuGUcuuuauccuGGAUUACGaccaAUCGCCCGCCg -3'
miRNA:   3'- aACGU-CG---------UCUGAUGCa---UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 105028 0.67 0.801676
Target:  5'- -aGCGGCuugaccuGGCUAUGcugGCCGCgauUCGCCg -3'
miRNA:   3'- aaCGUCGu------CUGAUGCa--UGGCG---GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 104413 0.67 0.801676
Target:  5'- -cGCGGCcauaacaaccGACguacgGCGUugCGCCCucGCCg -3'
miRNA:   3'- aaCGUCGu---------CUGa----UGCAugGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 104349 0.66 0.852255
Target:  5'- -aGCGcGUAuGGCUuCGUACC-CCUGCCa -3'
miRNA:   3'- aaCGU-CGU-CUGAuGCAUGGcGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 103788 0.68 0.725986
Target:  5'- cUGCuGCAGACcccCGgGCgGCgCCGCCg -3'
miRNA:   3'- aACGuCGUCUGau-GCaUGgCG-GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 102480 0.68 0.755233
Target:  5'- -gGUAGCGGuACUGUG-GCCGgCCGCCc -3'
miRNA:   3'- aaCGUCGUC-UGAUGCaUGGCgGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 100860 0.67 0.801676
Target:  5'- -cGUAGguGACgauaGUGCCGaggcgCCGCCc -3'
miRNA:   3'- aaCGUCguCUGaug-CAUGGCg----GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 100106 0.76 0.301835
Target:  5'- -cGCGGCcGGCUG---ACCGCCCGCCu -3'
miRNA:   3'- aaCGUCGuCUGAUgcaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 100036 0.67 0.810539
Target:  5'- -cGCAGUAgGACUcCG-ACgGcCCCGCCu -3'
miRNA:   3'- aaCGUCGU-CUGAuGCaUGgC-GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 99884 0.71 0.543411
Target:  5'- cUGCuGCAGAg-ACGUcACCGCCC-CCa -3'
miRNA:   3'- aACGuCGUCUgaUGCA-UGGCGGGcGG- -5'
5732 5' -57.3 NC_001806.1 + 97423 0.7 0.614348
Target:  5'- -cGUGGCcugGGACUGgGUGCCaaagcGCCCGUCg -3'
miRNA:   3'- aaCGUCG---UCUGAUgCAUGG-----CGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.