Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5735 | 3' | -52.3 | NC_001806.1 | + | 9135 | 0.67 | 0.973544 |
Target: 5'- cAGGGAGGGGGcGUCGacagccuGGAgggCCAucGGg -3' miRNA: 3'- cUUCUUCUCCC-CAGC-------CCUa--GGUuuCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 99681 | 0.67 | 0.971007 |
Target: 5'- cGggGGAGuGGGGgcaUGGGAcgCCGGacccuGGGg -3' miRNA: 3'- -CuuCUUCuCCCCa--GCCCUa-GGUU-----UCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 4836 | 0.68 | 0.949538 |
Target: 5'- cGAGGccGcGGGGUCGGGcgucgggaucGUCCGGAcGGc -3' miRNA: 3'- -CUUCuuCuCCCCAGCCC----------UAGGUUU-CC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 120322 | 0.68 | 0.945142 |
Target: 5'- gGggGAcGGGGcGGUCGGGggCgGcGGGu -3' miRNA: 3'- -CuuCUuCUCC-CCAGCCCuaGgUuUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 35048 | 0.68 | 0.961297 |
Target: 5'- nGGAGAGGGGGGGagaGGGGagCCAGu-- -3' miRNA: 3'- -CUUCUUCUCCCCag-CCCUa-GGUUucc -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 14222 | 0.68 | 0.945592 |
Target: 5'- gGggGggGGGGGGgaaauuauacgacaaCuGGGUCCAuguAGGg -3' miRNA: 3'- -CuuCuuCUCCCCa--------------GcCCUAGGUu--UCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 66543 | 0.68 | 0.949109 |
Target: 5'- cGAGGggGAagucGGGGUuucgguuUGGGG-CCGGGGGc -3' miRNA: 3'- -CUUCuuCU----CCCCA-------GCCCUaGGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 44794 | 0.68 | 0.949538 |
Target: 5'- uGAGGGccGGGGGGGUCGccaGGAugUCCAGGa- -3' miRNA: 3'- -CUUCU--UCUCCCCAGC---CCU--AGGUUUcc -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 127405 | 0.68 | 0.955289 |
Target: 5'- aGggGggGGGGGGgacggugauaguaaCGGGAUCgGAc-- -3' miRNA: 3'- -CuuCuuCUCCCCa-------------GCCCUAGgUUucc -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 145546 | 0.68 | 0.957612 |
Target: 5'- -uGGggGGGGGGagugCGGGGga-GGGGGg -3' miRNA: 3'- cuUCuuCUCCCCa---GCCCUaggUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 151274 | 0.68 | 0.957612 |
Target: 5'- cGGGcGGuGGGGGcCGGGG-CCGGGGGg -3' miRNA: 3'- cUUCuUC-UCCCCaGCCCUaGGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 145237 | 0.68 | 0.959113 |
Target: 5'- -uAGAGGGGGGGgacccaaacgacaGGGGgcgccCCAGAGGc -3' miRNA: 3'- cuUCUUCUCCCCag-----------CCCUa----GGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 30527 | 0.69 | 0.919468 |
Target: 5'- cGAGGAAGAGgcgcGGGUCGGG--CCAGGa- -3' miRNA: 3'- -CUUCUUCUC----CCCAGCCCuaGGUUUcc -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 4988 | 0.69 | 0.913589 |
Target: 5'- cGAGucguGGGGGuGGUCGGGGUCguGgucGGGg -3' miRNA: 3'- cUUCu---UCUCC-CCAGCCCUAGguU---UCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 45512 | 0.69 | 0.935615 |
Target: 5'- uGGGguGAGGGGUgGGGGU--GGAGGg -3' miRNA: 3'- cUUCuuCUCCCCAgCCCUAggUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25412 | 0.69 | 0.937599 |
Target: 5'- aGggGgcGAGGGG-CGGuGGUggugcgcgggcgcccCCGGAGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCC-CUA---------------GGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 54101 | 0.69 | 0.919468 |
Target: 5'- cGggGAGccgagcccgcauGGGGGGUguccCGGGGcCCAGGGGc -3' miRNA: 3'- -CuuCUU------------CUCCCCA----GCCCUaGGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 111343 | 0.69 | 0.930481 |
Target: 5'- cGGGggGGGGGGUauauaaggccUGGGAUCCc---- -3' miRNA: 3'- cUUCuuCUCCCCA----------GCCCUAGGuuucc -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 32026 | 0.69 | 0.940502 |
Target: 5'- uGggGcGGAGGGGUgGGGGg--GGGGGa -3' miRNA: 3'- -CuuCuUCUCCCCAgCCCUaggUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 32858 | 0.69 | 0.935615 |
Target: 5'- uGAAGAAGGGGGGg-GGGAgaagCgAGaacAGGa -3' miRNA: 3'- -CUUCUUCUCCCCagCCCUa---GgUU---UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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