miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5735 3' -52.3 NC_001806.1 + 25242 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 11304 0.74 0.720609
Target:  5'- aGggGAGGcguuGGGGUgggugucgUGGGGUCCAcGGGg -3'
miRNA:   3'- -CuuCUUCu---CCCCA--------GCCCUAGGUuUCC- -5'
5735 3' -52.3 NC_001806.1 + 25106 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25140 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25174 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25208 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 83808 0.73 0.740652
Target:  5'- gGgcGAGGAGGGGgCGGGGUCgGcgcGGGa -3'
miRNA:   3'- -CuuCUUCUCCCCaGCCCUAGgUu--UCC- -5'
5735 3' -52.3 NC_001806.1 + 28177 0.73 0.75053
Target:  5'- cGAGguGAGGGGcCGGGcgCCAugucuGGGg -3'
miRNA:   3'- cUUCuuCUCCCCaGCCCuaGGUu----UCC- -5'
5735 3' -52.3 NC_001806.1 + 56668 0.73 0.7603
Target:  5'- uGGGAucguuGGGGGGUCGGGGgggaCGGGGGc -3'
miRNA:   3'- cUUCUu----CUCCCCAGCCCUag--GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 20989 0.73 0.769952
Target:  5'- cGAcGgcGGGGGucGUCGGGGUCCGuGGGu -3'
miRNA:   3'- -CUuCuuCUCCC--CAGCCCUAGGUuUCC- -5'
5735 3' -52.3 NC_001806.1 + 147475 0.72 0.798105
Target:  5'- aGAGGcggcGGAGGGGagCGGGGcggcgCCGGAGGg -3'
miRNA:   3'- -CUUCu---UCUCCCCa-GCCCUa----GGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 34913 0.72 0.816109
Target:  5'- gGGAGAGGGGGGGagaGGGAga-GGGGGg -3'
miRNA:   3'- -CUUCUUCUCCCCag-CCCUaggUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 34953 0.72 0.824854
Target:  5'- gGggGGAGAGGGGagaGGGGgggaGAGGGg -3'
miRNA:   3'- -CuuCUUCUCCCCag-CCCUagg-UUUCC- -5'
5735 3' -52.3 NC_001806.1 + 34987 0.72 0.824854
Target:  5'- gGggGGAGAGGGGagaGGGGgggaGAGGGg -3'
miRNA:   3'- -CuuCUUCUCCCCag-CCCUagg-UUUCC- -5'
5735 3' -52.3 NC_001806.1 + 35021 0.72 0.824854
Target:  5'- gGggGGAGAGGGGagaGGGGgggaGAGGGg -3'
miRNA:   3'- -CuuCUUCUCCCCag-CCCUagg-UUUCC- -5'
5735 3' -52.3 NC_001806.1 + 34474 0.71 0.841791
Target:  5'- aGAAGgcGGGGGGggGGGAgaCGGGGGg -3'
miRNA:   3'- -CUUCuuCUCCCCagCCCUagGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 29994 0.71 0.849158
Target:  5'- cGggGggGuuGGGGUUGGGGUUgggguuguugaagCGGAGGc -3'
miRNA:   3'- -CuuCuuCu-CCCCAGCCCUAG-------------GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 151056 0.71 0.857936
Target:  5'- cGAGAAGcgcacccgcgcGGGGGUCgcgGGGGUCgCGGGGGu -3'
miRNA:   3'- cUUCUUC-----------UCCCCAG---CCCUAG-GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 32166 0.71 0.873232
Target:  5'- uGAAGGAGGGGGGgCGGugcuucuuaGAgaccgCCGGGGGa -3'
miRNA:   3'- -CUUCUUCUCCCCaGCC---------CUa----GGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 11792 0.7 0.887632
Target:  5'- cGAGGGAGcGGGGaUGGuGGUCgAGGGGg -3'
miRNA:   3'- -CUUCUUCuCCCCaGCC-CUAGgUUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.