miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5735 3' -52.3 NC_001806.1 + 25208 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25242 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25276 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25310 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25344 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25378 0.74 0.720609
Target:  5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 25412 0.69 0.937599
Target:  5'- aGggGgcGAGGGG-CGGuGGUggugcgcgggcgcccCCGGAGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCC-CUA---------------GGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 28177 0.73 0.75053
Target:  5'- cGAGguGAGGGGcCGGGcgCCAugucuGGGg -3'
miRNA:   3'- cUUCuuCUCCCCaGCCCuaGGUu----UCC- -5'
5735 3' -52.3 NC_001806.1 + 28752 1.11 0.005035
Target:  5'- gGAAGAAGAGGGGUCGGGAUCCAAAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCAGCCCUAGGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 29016 0.67 0.971007
Target:  5'- cGAAGuGGGGGGG-CGGGGggacgCCGAc-- -3'
miRNA:   3'- -CUUCuUCUCCCCaGCCCUa----GGUUucc -5'
5735 3' -52.3 NC_001806.1 + 29647 0.75 0.658896
Target:  5'- gGAGGAGGAGGGGggGGGAg--GGAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCagCCCUaggUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 29994 0.71 0.849158
Target:  5'- cGggGggGuuGGGGUUGGGGUUgggguuguugaagCGGAGGc -3'
miRNA:   3'- -CuuCuuCu-CCCCAGCCCUAG-------------GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 30416 0.66 0.98668
Target:  5'- ----cGGGGGGGcCGGGcgUgGAGGGu -3'
miRNA:   3'- cuucuUCUCCCCaGCCCuaGgUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 30527 0.69 0.919468
Target:  5'- cGAGGAAGAGgcgcGGGUCGGG--CCAGGa- -3'
miRNA:   3'- -CUUCUUCUC----CCCAGCCCuaGGUUUcc -5'
5735 3' -52.3 NC_001806.1 + 31369 0.76 0.606759
Target:  5'- uGggGAgGGGGGGGUCGGGcgCUggGuGGu -3'
miRNA:   3'- -CuuCU-UCUCCCCAGCCCuaGGuuU-CC- -5'
5735 3' -52.3 NC_001806.1 + 32026 0.69 0.940502
Target:  5'- uGggGcGGAGGGGUgGGGGg--GGGGGa -3'
miRNA:   3'- -CuuCuUCUCCCCAgCCCUaggUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 32166 0.71 0.873232
Target:  5'- uGAAGGAGGGGGGgCGGugcuucuuaGAgaccgCCGGGGGa -3'
miRNA:   3'- -CUUCUUCUCCCCaGCC---------CUa----GGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 32858 0.69 0.935615
Target:  5'- uGAAGAAGGGGGGg-GGGAgaagCgAGaacAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCagCCCUa---GgUU---UCC- -5'
5735 3' -52.3 NC_001806.1 + 34075 0.67 0.971007
Target:  5'- cGAGGAGAcuGGGGUgGGGGUgUCGGuGGg -3'
miRNA:   3'- cUUCUUCU--CCCCAgCCCUA-GGUUuCC- -5'
5735 3' -52.3 NC_001806.1 + 34362 0.66 0.978831
Target:  5'- -cGGggGAccGGGGcUGGGuAUCCcGAGGu -3'
miRNA:   3'- cuUCuuCU--CCCCaGCCC-UAGGuUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.