miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5742 5' -49.5 NC_001806.1 + 109575 0.66 0.997127
Target:  5'- cGUAUgGGGACGGgguauacacaaAGUGCGAggaaACGUUg- -3'
miRNA:   3'- -UAUAaCCCUGCU-----------UCACGCU----UGCGAag -5'
5742 5' -49.5 NC_001806.1 + 111235 0.66 0.997127
Target:  5'- ---gUGGGugGcGGcgGCGGACaGCUUUg -3'
miRNA:   3'- uauaACCCugCuUCa-CGCUUG-CGAAG- -5'
5742 5' -49.5 NC_001806.1 + 15623 0.66 0.99636
Target:  5'- ---cUGGGGCGAAGcgcgccgucgaagGUGAGgGCUUUg -3'
miRNA:   3'- uauaACCCUGCUUCa------------CGCUUgCGAAG- -5'
5742 5' -49.5 NC_001806.1 + 90540 0.66 0.995287
Target:  5'- ----gGGaGGCGcuGUGUGAGCGCcUCg -3'
miRNA:   3'- uauaaCC-CUGCuuCACGCUUGCGaAG- -5'
5742 5' -49.5 NC_001806.1 + 41850 0.66 0.995287
Target:  5'- ----cGGGcGCGuacGUGCGAGCGCg-- -3'
miRNA:   3'- uauaaCCC-UGCuu-CACGCUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 63007 0.67 0.994494
Target:  5'- ----aGGGACGGGccccGCGAACGCa-- -3'
miRNA:   3'- uauaaCCCUGCUUca--CGCUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 99624 0.67 0.993596
Target:  5'- ---cUGGGugGAAGgacauggggGCGGugGCg-- -3'
miRNA:   3'- uauaACCCugCUUCa--------CGCUugCGaag -5'
5742 5' -49.5 NC_001806.1 + 97926 0.67 0.99133
Target:  5'- uAUGUUGGGccgcguugccaucGCGuGGUGCGAGCuGCa-- -3'
miRNA:   3'- -UAUAACCC-------------UGCuUCACGCUUG-CGaag -5'
5742 5' -49.5 NC_001806.1 + 81666 0.67 0.990184
Target:  5'- ---gUGGGGCGAAG-GCguccgGAACGCa-- -3'
miRNA:   3'- uauaACCCUGCUUCaCG-----CUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 43978 0.67 0.990184
Target:  5'- ---gUGGGAUGGAGggGCGggUGUg-- -3'
miRNA:   3'- uauaACCCUGCUUCa-CGCuuGCGaag -5'
5742 5' -49.5 NC_001806.1 + 44568 0.67 0.990184
Target:  5'- --uUUGGaAgGAAG-GCGAugGCUUCu -3'
miRNA:   3'- uauAACCcUgCUUCaCGCUugCGAAG- -5'
5742 5' -49.5 NC_001806.1 + 25011 0.67 0.990184
Target:  5'- ----cGGGACGggGcG-GGGCGCUUg -3'
miRNA:   3'- uauaaCCCUGCuuCaCgCUUGCGAAg -5'
5742 5' -49.5 NC_001806.1 + 25413 0.68 0.988774
Target:  5'- ----gGGGGCGAGGgGCGGugGUg-- -3'
miRNA:   3'- uauaaCCCUGCUUCaCGCUugCGaag -5'
5742 5' -49.5 NC_001806.1 + 6476 0.68 0.985486
Target:  5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 6542 0.68 0.985486
Target:  5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 6520 0.68 0.985486
Target:  5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 6498 0.68 0.985486
Target:  5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 6454 0.68 0.985486
Target:  5'- ----gGGGGCGGAGgaggGgGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCUUCa---CgCUUGCGaag -5'
5742 5' -49.5 NC_001806.1 + 49986 0.68 0.983589
Target:  5'- ----cGGGugGguGUGCGGgacGCGcCUUCa -3'
miRNA:   3'- uauaaCCCugCuuCACGCU---UGC-GAAG- -5'
5742 5' -49.5 NC_001806.1 + 141327 0.68 0.98151
Target:  5'- ----aGGGGCGAcgGGUGCGAaaacuugaggACGCa-- -3'
miRNA:   3'- uauaaCCCUGCU--UCACGCU----------UGCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.