Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5743 | 3' | -58.8 | NC_001806.1 | + | 19608 | 1.1 | 0.001319 |
Target: 5'- cGUCCCGGAGGACCACAGUGGCUUCCCc -3' miRNA: 3'- -CAGGGCCUCCUGGUGUCACCGAAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 67993 | 0.76 | 0.275859 |
Target: 5'- gGUCCUGGAGGGCCGCGG-GGgaUCg- -3' miRNA: 3'- -CAGGGCCUCCUGGUGUCaCCgaAGgg -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 136920 | 0.74 | 0.36077 |
Target: 5'- cGUCCuCGGGGGAgCACAGc-GCUUCCg -3' miRNA: 3'- -CAGG-GCCUCCUgGUGUCacCGAAGGg -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 119608 | 0.73 | 0.418094 |
Target: 5'- -cCCCGGcgGGGGCCGCuuuGUGGC--CCCa -3' miRNA: 3'- caGGGCC--UCCUGGUGu--CACCGaaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 49582 | 0.73 | 0.418094 |
Target: 5'- cGUCgggCCGGAGGACgGCGGcggGGCccgUUCCCc -3' miRNA: 3'- -CAG---GGCCUCCUGgUGUCa--CCG---AAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 143129 | 0.73 | 0.421534 |
Target: 5'- -gCCgGGAGGgGCCGCGGaugggcgggccuacuUGGUUUCCCg -3' miRNA: 3'- caGGgCCUCC-UGGUGUC---------------ACCGAAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 85982 | 0.73 | 0.384658 |
Target: 5'- cUCCCGGGGGGuCgGCAGgcgacGGCgucUCCCg -3' miRNA: 3'- cAGGGCCUCCU-GgUGUCa----CCGa--AGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 22920 | 0.71 | 0.527948 |
Target: 5'- --gCCGGAGGGacCCGCGGgccccGCUUCCCc -3' miRNA: 3'- cagGGCCUCCU--GGUGUCac---CGAAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 150084 | 0.71 | 0.517377 |
Target: 5'- cGUCCCaggGGAGGcaggcccACCGCGG-GGCggCCCc -3' miRNA: 3'- -CAGGG---CCUCC-------UGGUGUCaCCGaaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 102066 | 0.71 | 0.50879 |
Target: 5'- -aCCCGGAGGccCCACGGgcgaUGGCcUCCg -3' miRNA: 3'- caGGGCCUCCu-GGUGUC----ACCGaAGGg -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 31064 | 0.71 | 0.527948 |
Target: 5'- gGUCCUGGuGGACCagACGGgaaacaUGGCgaCCCg -3' miRNA: 3'- -CAGGGCCuCCUGG--UGUC------ACCGaaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 132780 | 0.7 | 0.576897 |
Target: 5'- gGUgCgGGAGGcgguGgCGCGGUGGCaUCCCg -3' miRNA: 3'- -CAgGgCCUCC----UgGUGUCACCGaAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 121432 | 0.7 | 0.557164 |
Target: 5'- -gCCCGG-GGGCC-UGGUGGCaccUCCCc -3' miRNA: 3'- caGGGCCuCCUGGuGUCACCGa--AGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 10298 | 0.7 | 0.576897 |
Target: 5'- -cCCCGGGGGAaaACAGgauaGCUUCCg -3' miRNA: 3'- caGGGCCUCCUggUGUCac--CGAAGGg -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 133699 | 0.69 | 0.626777 |
Target: 5'- uGUCCCGGAGGcggggaguCGGUcGGCgUCCCc -3' miRNA: 3'- -CAGGGCCUCCuggu----GUCA-CCGaAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 129714 | 0.69 | 0.636792 |
Target: 5'- -gCCCGGGGGGCCACguucuuuggggAGUGGaagcgcgCCUu -3' miRNA: 3'- caGGGCCUCCUGGUG-----------UCACCgaa----GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 96786 | 0.69 | 0.656806 |
Target: 5'- gGUCagaacuacaCGGAGGGCuCGCGGUGGuCUUCa- -3' miRNA: 3'- -CAGg--------GCCUCCUG-GUGUCACC-GAAGgg -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 66800 | 0.69 | 0.606764 |
Target: 5'- -gCCgGGAGGAUCACGGccgagcggGGCcggCCCg -3' miRNA: 3'- caGGgCCUCCUGGUGUCa-------CCGaa-GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 50202 | 0.69 | 0.643802 |
Target: 5'- -gCCCGGGgugcgcgcgcugcuGGACCGCGacugucgcGUGGCcgCCCg -3' miRNA: 3'- caGGGCCU--------------CCUGGUGU--------CACCGaaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 114509 | 0.69 | 0.636792 |
Target: 5'- uUCgCCGGGGccGACCAC-GUGGCgaacgcgCCCa -3' miRNA: 3'- cAG-GGCCUC--CUGGUGuCACCGaa-----GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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