miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 2284 0.66 0.791056
Target:  5'- -gCUCGGcGGACCACuccGGCggCCCc -3'
miRNA:   3'- caGGGCCuCCUGGUGucaCCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 2793 0.67 0.767459
Target:  5'- -gCCCGGGGcGCCGCGGgcugggcgggggcgGGCUcgggCCCc -3'
miRNA:   3'- caGGGCCUCcUGGUGUCa-------------CCGAa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 3954 0.68 0.696541
Target:  5'- cGUCCCcGGGGACCACGcGcGGgUUCUg -3'
miRNA:   3'- -CAGGGcCUCCUGGUGU-CaCCgAAGGg -5'
5743 3' -58.8 NC_001806.1 + 9154 0.66 0.817123
Target:  5'- -gCCUGGAGGGCCAuCGGggagacaacGGCcguguagCCCg -3'
miRNA:   3'- caGGGCCUCCUGGU-GUCa--------CCGaa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 10298 0.7 0.576897
Target:  5'- -cCCCGGGGGAaaACAGgauaGCUUCCg -3'
miRNA:   3'- caGGGCCUCCUggUGUCac--CGAAGGg -5'
5743 3' -58.8 NC_001806.1 + 19358 0.68 0.713209
Target:  5'- -cUCCGGGGGGCCcuacggccaccgauGCGGggGGCUucaUCCUg -3'
miRNA:   3'- caGGGCCUCCUGG--------------UGUCa-CCGA---AGGG- -5'
5743 3' -58.8 NC_001806.1 + 19608 1.1 0.001319
Target:  5'- cGUCCCGGAGGACCACAGUGGCUUCCCc -3'
miRNA:   3'- -CAGGGCCUCCUGGUGUCACCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 20316 0.66 0.803388
Target:  5'- gGUCCCgcccgccggccaaugGGGGGGCgGCaAGgcgGGCggCCCu -3'
miRNA:   3'- -CAGGG---------------CCUCCUGgUG-UCa--CCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 22262 0.66 0.791056
Target:  5'- -aCgCGGAGG-CCAUggGGUGGCUccagaaCCCg -3'
miRNA:   3'- caGgGCCUCCuGGUG--UCACCGAa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 22920 0.71 0.527948
Target:  5'- --gCCGGAGGGacCCGCGGgccccGCUUCCCc -3'
miRNA:   3'- cagGGCCUCCU--GGUGUCac---CGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 24798 0.66 0.817123
Target:  5'- -gCCCGGGGGcccuGCCGCc--GGCgccgCCCg -3'
miRNA:   3'- caGGGCCUCC----UGGUGucaCCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 26222 0.67 0.73449
Target:  5'- -cCCCGGGGGucgcgcgcgGCCcuuuaaaGCGGUGGCggcgggcagCCCg -3'
miRNA:   3'- caGGGCCUCC---------UGG-------UGUCACCGaa-------GGG- -5'
5743 3' -58.8 NC_001806.1 + 27843 0.66 0.782082
Target:  5'- gGUCCCcGGGGAcggggccgccCCGCGGUGGgcCUgccUCCCc -3'
miRNA:   3'- -CAGGGcCUCCU----------GGUGUCACC--GA---AGGG- -5'
5743 3' -58.8 NC_001806.1 + 28135 0.66 0.808585
Target:  5'- -cCCCGGAGcgaguacccgccGGCCugAG-GGCcgCCCc -3'
miRNA:   3'- caGGGCCUC------------CUGGugUCaCCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 30639 0.66 0.791056
Target:  5'- --gCCGGGGGGgCGCGGccagGGUgggCCCg -3'
miRNA:   3'- cagGGCCUCCUgGUGUCa---CCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 31064 0.71 0.527948
Target:  5'- gGUCCUGGuGGACCagACGGgaaacaUGGCgaCCCg -3'
miRNA:   3'- -CAGGGCCuCCUGG--UGUC------ACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 33127 0.67 0.744981
Target:  5'- -gCCCGGAccGCCGCGGUcgggGGCcccucgUCCCg -3'
miRNA:   3'- caGGGCCUccUGGUGUCA----CCGa-----AGGG- -5'
5743 3' -58.8 NC_001806.1 + 34352 0.67 0.724862
Target:  5'- -cCCCGGggaacggGGGACCGgGGcugGGUaUCCCg -3'
miRNA:   3'- caGGGCC-------UCCUGGUgUCa--CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 46057 0.68 0.666788
Target:  5'- -aCCCGGAGGucCCcCGGacgcGGCgUCCCg -3'
miRNA:   3'- caGGGCCUCCu-GGuGUCa---CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 49582 0.73 0.418094
Target:  5'- cGUCgggCCGGAGGACgGCGGcggGGCccgUUCCCc -3'
miRNA:   3'- -CAG---GGCCUCCUGgUGUCa--CCG---AAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.