miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 19608 1.1 0.001319
Target:  5'- cGUCCCGGAGGACCACAGUGGCUUCCCc -3'
miRNA:   3'- -CAGGGCCUCCUGGUGUCACCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 67993 0.76 0.275859
Target:  5'- gGUCCUGGAGGGCCGCGG-GGgaUCg- -3'
miRNA:   3'- -CAGGGCCUCCUGGUGUCaCCgaAGgg -5'
5743 3' -58.8 NC_001806.1 + 136920 0.74 0.36077
Target:  5'- cGUCCuCGGGGGAgCACAGc-GCUUCCg -3'
miRNA:   3'- -CAGG-GCCUCCUgGUGUCacCGAAGGg -5'
5743 3' -58.8 NC_001806.1 + 85982 0.73 0.384658
Target:  5'- cUCCCGGGGGGuCgGCAGgcgacGGCgucUCCCg -3'
miRNA:   3'- cAGGGCCUCCU-GgUGUCa----CCGa--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 49582 0.73 0.418094
Target:  5'- cGUCgggCCGGAGGACgGCGGcggGGCccgUUCCCc -3'
miRNA:   3'- -CAG---GGCCUCCUGgUGUCa--CCG---AAGGG- -5'
5743 3' -58.8 NC_001806.1 + 119608 0.73 0.418094
Target:  5'- -cCCCGGcgGGGGCCGCuuuGUGGC--CCCa -3'
miRNA:   3'- caGGGCC--UCCUGGUGu--CACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 143129 0.73 0.421534
Target:  5'- -gCCgGGAGGgGCCGCGGaugggcgggccuacuUGGUUUCCCg -3'
miRNA:   3'- caGGgCCUCC-UGGUGUC---------------ACCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 102066 0.71 0.50879
Target:  5'- -aCCCGGAGGccCCACGGgcgaUGGCcUCCg -3'
miRNA:   3'- caGGGCCUCCu-GGUGUC----ACCGaAGGg -5'
5743 3' -58.8 NC_001806.1 + 150084 0.71 0.517377
Target:  5'- cGUCCCaggGGAGGcaggcccACCGCGG-GGCggCCCc -3'
miRNA:   3'- -CAGGG---CCUCC-------UGGUGUCaCCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 22920 0.71 0.527948
Target:  5'- --gCCGGAGGGacCCGCGGgccccGCUUCCCc -3'
miRNA:   3'- cagGGCCUCCU--GGUGUCac---CGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 31064 0.71 0.527948
Target:  5'- gGUCCUGGuGGACCagACGGgaaacaUGGCgaCCCg -3'
miRNA:   3'- -CAGGGCCuCCUGG--UGUC------ACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 121432 0.7 0.557164
Target:  5'- -gCCCGG-GGGCC-UGGUGGCaccUCCCc -3'
miRNA:   3'- caGGGCCuCCUGGuGUCACCGa--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 10298 0.7 0.576897
Target:  5'- -cCCCGGGGGAaaACAGgauaGCUUCCg -3'
miRNA:   3'- caGGGCCUCCUggUGUCac--CGAAGGg -5'
5743 3' -58.8 NC_001806.1 + 132780 0.7 0.576897
Target:  5'- gGUgCgGGAGGcgguGgCGCGGUGGCaUCCCg -3'
miRNA:   3'- -CAgGgCCUCC----UgGUGUCACCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 64675 0.69 0.606764
Target:  5'- uGUCCUGGGGGGgaCACGcuUGGUUUCCUc -3'
miRNA:   3'- -CAGGGCCUCCUg-GUGUc-ACCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 66800 0.69 0.606764
Target:  5'- -gCCgGGAGGAUCACGGccgagcggGGCcggCCCg -3'
miRNA:   3'- caGGgCCUCCUGGUGUCa-------CCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 77602 0.69 0.606764
Target:  5'- gGUCCCGGAuGGAacgccaCUGCAGUacgcgcucuGCUUCCCg -3'
miRNA:   3'- -CAGGGCCU-CCU------GGUGUCAc--------CGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 133699 0.69 0.626777
Target:  5'- uGUCCCGGAGGcggggaguCGGUcGGCgUCCCc -3'
miRNA:   3'- -CAGGGCCUCCuggu----GUCA-CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 129714 0.69 0.636792
Target:  5'- -gCCCGGGGGGCCACguucuuuggggAGUGGaagcgcgCCUu -3'
miRNA:   3'- caGGGCCUCCUGGUG-----------UCACCgaa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 114509 0.69 0.636792
Target:  5'- uUCgCCGGGGccGACCAC-GUGGCgaacgcgCCCa -3'
miRNA:   3'- cAG-GGCCUC--CUGGUGuCACCGaa-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.