miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 50202 0.69 0.643802
Target:  5'- -gCCCGGGgugcgcgcgcugcuGGACCGCGacugucgcGUGGCcgCCCg -3'
miRNA:   3'- caGGGCCU--------------CCUGGUGU--------CACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 96786 0.69 0.656806
Target:  5'- gGUCagaacuacaCGGAGGGCuCGCGGUGGuCUUCa- -3'
miRNA:   3'- -CAGg--------GCCUCCUG-GUGUCACC-GAAGgg -5'
5743 3' -58.8 NC_001806.1 + 46057 0.68 0.666788
Target:  5'- -aCCCGGAGGucCCcCGGacgcGGCgUCCCg -3'
miRNA:   3'- caGGGCCUCCu-GGuGUCa---CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 52711 0.68 0.666788
Target:  5'- gGUUCCGGAGGcGCCGCGcGgacGGCgcggggCCCc -3'
miRNA:   3'- -CAGGGCCUCC-UGGUGU-Ca--CCGaa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 102339 0.68 0.686664
Target:  5'- cGUCCCGGGGGAcgucCCcCGG-GGCcgCCg -3'
miRNA:   3'- -CAGGGCCUCCU----GGuGUCaCCGaaGGg -5'
5743 3' -58.8 NC_001806.1 + 90343 0.68 0.686664
Target:  5'- -gCUCGGGGGuACCGCGGUG---UCCCu -3'
miRNA:   3'- caGGGCCUCC-UGGUGUCACcgaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 57368 0.68 0.693583
Target:  5'- -cUCCGGGGacacGGCC-CGGUGGCUgucguugcggagcaUCCCg -3'
miRNA:   3'- caGGGCCUC----CUGGuGUCACCGA--------------AGGG- -5'
5743 3' -58.8 NC_001806.1 + 3954 0.68 0.696541
Target:  5'- cGUCCCcGGGGACCACGcGcGGgUUCUg -3'
miRNA:   3'- -CAGGGcCUCCUGGUGU-CaCCgAAGGg -5'
5743 3' -58.8 NC_001806.1 + 19358 0.68 0.713209
Target:  5'- -cUCCGGGGGGCCcuacggccaccgauGCGGggGGCUucaUCCUg -3'
miRNA:   3'- caGGGCCUCCUGG--------------UGUCa-CCGA---AGGG- -5'
5743 3' -58.8 NC_001806.1 + 150120 0.68 0.716132
Target:  5'- cGUCCCcGGGGACCAacccGGCgccCCCa -3'
miRNA:   3'- -CAGGGcCUCCUGGUgucaCCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 34352 0.67 0.724862
Target:  5'- -cCCCGGggaacggGGGACCGgGGcugGGUaUCCCg -3'
miRNA:   3'- caGGGCC-------UCCUGGUgUCa--CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 130735 0.67 0.725829
Target:  5'- cGUCCCGGAGaGCUggaGCucGUGGCccugCCCc -3'
miRNA:   3'- -CAGGGCCUCcUGG---UGu-CACCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 26222 0.67 0.73449
Target:  5'- -cCCCGGGGGucgcgcgcgGCCcuuuaaaGCGGUGGCggcgggcagCCCg -3'
miRNA:   3'- caGGGCCUCC---------UGG-------UGUCACCGaa-------GGG- -5'
5743 3' -58.8 NC_001806.1 + 147502 0.67 0.73449
Target:  5'- --gCCGGAGGgggcggcGCCGCGGgagGGCccgugCCCa -3'
miRNA:   3'- cagGGCCUCC-------UGGUGUCa--CCGaa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 146796 0.67 0.735448
Target:  5'- -aCUCGGGGGGCauCAC-GUGGUUaCCCg -3'
miRNA:   3'- caGGGCCUCCUG--GUGuCACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 97593 0.67 0.735448
Target:  5'- -aCCUGGGGGACUGCAucGGCaaggacgCCCg -3'
miRNA:   3'- caGGGCCUCCUGGUGUcaCCGaa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 121564 0.67 0.735448
Target:  5'- -aCCCGGGGGGCUGCgAGUccuGCgcCCCg -3'
miRNA:   3'- caGGGCCUCCUGGUG-UCAc--CGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 33127 0.67 0.744981
Target:  5'- -gCCCGGAccGCCGCGGUcgggGGCcccucgUCCCg -3'
miRNA:   3'- caGGGCCUccUGGUGUCA----CCGa-----AGGG- -5'
5743 3' -58.8 NC_001806.1 + 122340 0.67 0.744981
Target:  5'- --gCCGGGGGACgagaaaCACGGUGGCgcgCUg -3'
miRNA:   3'- cagGGCCUCCUG------GUGUCACCGaa-GGg -5'
5743 3' -58.8 NC_001806.1 + 103489 0.67 0.75442
Target:  5'- -aCCCGG-GGGCUguugucgGGUGGCU-CCCg -3'
miRNA:   3'- caGGGCCuCCUGGug-----UCACCGAaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.