Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5743 | 3' | -58.8 | NC_001806.1 | + | 103489 | 0.67 | 0.75442 |
Target: 5'- -aCCCGG-GGGCUguugucgGGUGGCU-CCCg -3' miRNA: 3'- caGGGCCuCCUGGug-----UCACCGAaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 136208 | 0.67 | 0.755358 |
Target: 5'- gGUCCacaaGGGGGGCCACAGcaccagacauucuccGcGCUgCCCg -3' miRNA: 3'- -CAGGg---CCUCCUGGUGUCa--------------C-CGAaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 86026 | 0.67 | 0.762827 |
Target: 5'- --gCCGGggagggcAGGGCCGCGGggggggcgGGCUcgUCCCc -3' miRNA: 3'- cagGGCC-------UCCUGGUGUCa-------CCGA--AGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 56506 | 0.67 | 0.763755 |
Target: 5'- -aCCUGG-GG-CCACAGcGGCaggCCCg -3' miRNA: 3'- caGGGCCuCCuGGUGUCaCCGaa-GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 73440 | 0.67 | 0.763755 |
Target: 5'- -gCCCGGAcgcacacccaGGCCGgGGUGGCcggCCCg -3' miRNA: 3'- caGGGCCUc---------CUGGUgUCACCGaa-GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 2793 | 0.67 | 0.767459 |
Target: 5'- -gCCCGGGGcGCCGCGGgcugggcgggggcgGGCUcgggCCCc -3' miRNA: 3'- caGGGCCUCcUGGUGUCa-------------CCGAa---GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 151104 | 0.67 | 0.772979 |
Target: 5'- gGUCgCGGGGG-UCGCGGggGGCUccggcgcccccUCCCc -3' miRNA: 3'- -CAGgGCCUCCuGGUGUCa-CCGA-----------AGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 145649 | 0.67 | 0.772979 |
Target: 5'- gGUgCCGGGGGACCGgGGUGa--UCUCu -3' miRNA: 3'- -CAgGGCCUCCUGGUgUCACcgaAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 70644 | 0.67 | 0.772979 |
Target: 5'- -aCCUGGGGGugUGCgacgAGcUGGCggCCCa -3' miRNA: 3'- caGGGCCUCCugGUG----UC-ACCGaaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 27843 | 0.66 | 0.782082 |
Target: 5'- gGUCCCcGGGGAcggggccgccCCGCGGUGGgcCUgccUCCCc -3' miRNA: 3'- -CAGGGcCUCCU----------GGUGUCACC--GA---AGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 74361 | 0.66 | 0.782082 |
Target: 5'- -cCCCcGAGGACCugGCGGccUGGCUcUCCg -3' miRNA: 3'- caGGGcCUCCUGG--UGUC--ACCGAaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 71422 | 0.66 | 0.791056 |
Target: 5'- aUCCCGGAGGA-CACcGUcGCgccaCCCa -3' miRNA: 3'- cAGGGCCUCCUgGUGuCAcCGaa--GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 30639 | 0.66 | 0.791056 |
Target: 5'- --gCCGGGGGGgCGCGGccagGGUgggCCCg -3' miRNA: 3'- cagGGCCUCCUgGUGUCa---CCGaa-GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 22262 | 0.66 | 0.791056 |
Target: 5'- -aCgCGGAGG-CCAUggGGUGGCUccagaaCCCg -3' miRNA: 3'- caGgGCCUCCuGGUG--UCACCGAa-----GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 126869 | 0.66 | 0.791056 |
Target: 5'- -gCCUGGAGGACgGCGccggGGCU-CUCg -3' miRNA: 3'- caGGGCCUCCUGgUGUca--CCGAaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 2284 | 0.66 | 0.791056 |
Target: 5'- -gCUCGGcGGACCACuccGGCggCCCc -3' miRNA: 3'- caGGGCCuCCUGGUGucaCCGaaGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 73989 | 0.66 | 0.799893 |
Target: 5'- -cCCCGGccGGGGcggccCCGCAGggGGCUccgcgCCCa -3' miRNA: 3'- caGGGCC--UCCU-----GGUGUCa-CCGAa----GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 76293 | 0.66 | 0.799893 |
Target: 5'- -gCCgCGGAGGAgauauCCGCGGUGcGCaacgaCCCg -3' miRNA: 3'- caGG-GCCUCCU-----GGUGUCAC-CGaa---GGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 80263 | 0.66 | 0.799893 |
Target: 5'- -gCCCGGAGG-CCc----GGUUUCCCg -3' miRNA: 3'- caGGGCCUCCuGGugucaCCGAAGGG- -5' |
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5743 | 3' | -58.8 | NC_001806.1 | + | 55737 | 0.66 | 0.799893 |
Target: 5'- -aCCCGGGGGACCcCGauGUGGgggCCUc -3' miRNA: 3'- caGGGCCUCCUGGuGU--CACCgaaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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