miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 57368 0.68 0.693583
Target:  5'- -cUCCGGGGacacGGCC-CGGUGGCUgucguugcggagcaUCCCg -3'
miRNA:   3'- caGGGCCUC----CUGGuGUCACCGA--------------AGGG- -5'
5743 3' -58.8 NC_001806.1 + 102339 0.68 0.686664
Target:  5'- cGUCCCGGGGGAcgucCCcCGG-GGCcgCCg -3'
miRNA:   3'- -CAGGGCCUCCU----GGuGUCaCCGaaGGg -5'
5743 3' -58.8 NC_001806.1 + 90343 0.68 0.686664
Target:  5'- -gCUCGGGGGuACCGCGGUG---UCCCu -3'
miRNA:   3'- caGGGCCUCC-UGGUGUCACcgaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 52711 0.68 0.666788
Target:  5'- gGUUCCGGAGGcGCCGCGcGgacGGCgcggggCCCc -3'
miRNA:   3'- -CAGGGCCUCC-UGGUGU-Ca--CCGaa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 46057 0.68 0.666788
Target:  5'- -aCCCGGAGGucCCcCGGacgcGGCgUCCCg -3'
miRNA:   3'- caGGGCCUCCu-GGuGUCa---CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 96786 0.69 0.656806
Target:  5'- gGUCagaacuacaCGGAGGGCuCGCGGUGGuCUUCa- -3'
miRNA:   3'- -CAGg--------GCCUCCUG-GUGUCACC-GAAGgg -5'
5743 3' -58.8 NC_001806.1 + 50202 0.69 0.643802
Target:  5'- -gCCCGGGgugcgcgcgcugcuGGACCGCGacugucgcGUGGCcgCCCg -3'
miRNA:   3'- caGGGCCU--------------CCUGGUGU--------CACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 114509 0.69 0.636792
Target:  5'- uUCgCCGGGGccGACCAC-GUGGCgaacgcgCCCa -3'
miRNA:   3'- cAG-GGCCUC--CUGGUGuCACCGaa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 129714 0.69 0.636792
Target:  5'- -gCCCGGGGGGCCACguucuuuggggAGUGGaagcgcgCCUu -3'
miRNA:   3'- caGGGCCUCCUGGUG-----------UCACCgaa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 133699 0.69 0.626777
Target:  5'- uGUCCCGGAGGcggggaguCGGUcGGCgUCCCc -3'
miRNA:   3'- -CAGGGCCUCCuggu----GUCA-CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 77602 0.69 0.606764
Target:  5'- gGUCCCGGAuGGAacgccaCUGCAGUacgcgcucuGCUUCCCg -3'
miRNA:   3'- -CAGGGCCU-CCU------GGUGUCAc--------CGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 66800 0.69 0.606764
Target:  5'- -gCCgGGAGGAUCACGGccgagcggGGCcggCCCg -3'
miRNA:   3'- caGGgCCUCCUGGUGUCa-------CCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 64675 0.69 0.606764
Target:  5'- uGUCCUGGGGGGgaCACGcuUGGUUUCCUc -3'
miRNA:   3'- -CAGGGCCUCCUg-GUGUc-ACCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 132780 0.7 0.576897
Target:  5'- gGUgCgGGAGGcgguGgCGCGGUGGCaUCCCg -3'
miRNA:   3'- -CAgGgCCUCC----UgGUGUCACCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 10298 0.7 0.576897
Target:  5'- -cCCCGGGGGAaaACAGgauaGCUUCCg -3'
miRNA:   3'- caGGGCCUCCUggUGUCac--CGAAGGg -5'
5743 3' -58.8 NC_001806.1 + 121432 0.7 0.557164
Target:  5'- -gCCCGG-GGGCC-UGGUGGCaccUCCCc -3'
miRNA:   3'- caGGGCCuCCUGGuGUCACCGa--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 22920 0.71 0.527948
Target:  5'- --gCCGGAGGGacCCGCGGgccccGCUUCCCc -3'
miRNA:   3'- cagGGCCUCCU--GGUGUCac---CGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 31064 0.71 0.527948
Target:  5'- gGUCCUGGuGGACCagACGGgaaacaUGGCgaCCCg -3'
miRNA:   3'- -CAGGGCCuCCUGG--UGUC------ACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 150084 0.71 0.517377
Target:  5'- cGUCCCaggGGAGGcaggcccACCGCGG-GGCggCCCc -3'
miRNA:   3'- -CAGGG---CCUCC-------UGGUGUCaCCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 102066 0.71 0.50879
Target:  5'- -aCCCGGAGGccCCACGGgcgaUGGCcUCCg -3'
miRNA:   3'- caGGGCCUCCu-GGUGUC----ACCGaAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.