miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 151104 0.67 0.772979
Target:  5'- gGUCgCGGGGG-UCGCGGggGGCUccggcgcccccUCCCc -3'
miRNA:   3'- -CAGgGCCUCCuGGUGUCa-CCGA-----------AGGG- -5'
5743 3' -58.8 NC_001806.1 + 2793 0.67 0.767459
Target:  5'- -gCCCGGGGcGCCGCGGgcugggcgggggcgGGCUcgggCCCc -3'
miRNA:   3'- caGGGCCUCcUGGUGUCa-------------CCGAa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 73440 0.67 0.763755
Target:  5'- -gCCCGGAcgcacacccaGGCCGgGGUGGCcggCCCg -3'
miRNA:   3'- caGGGCCUc---------CUGGUgUCACCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 56506 0.67 0.763755
Target:  5'- -aCCUGG-GG-CCACAGcGGCaggCCCg -3'
miRNA:   3'- caGGGCCuCCuGGUGUCaCCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 86026 0.67 0.762827
Target:  5'- --gCCGGggagggcAGGGCCGCGGggggggcgGGCUcgUCCCc -3'
miRNA:   3'- cagGGCC-------UCCUGGUGUCa-------CCGA--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 136208 0.67 0.755358
Target:  5'- gGUCCacaaGGGGGGCCACAGcaccagacauucuccGcGCUgCCCg -3'
miRNA:   3'- -CAGGg---CCUCCUGGUGUCa--------------C-CGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 147681 0.67 0.75442
Target:  5'- -cCCCGG-GGGCCggggcGCGGgGGCgggCCCc -3'
miRNA:   3'- caGGGCCuCCUGG-----UGUCaCCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 103489 0.67 0.75442
Target:  5'- -aCCCGG-GGGCUguugucgGGUGGCU-CCCg -3'
miRNA:   3'- caGGGCCuCCUGGug-----UCACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 122340 0.67 0.744981
Target:  5'- --gCCGGGGGACgagaaaCACGGUGGCgcgCUg -3'
miRNA:   3'- cagGGCCUCCUG------GUGUCACCGaa-GGg -5'
5743 3' -58.8 NC_001806.1 + 33127 0.67 0.744981
Target:  5'- -gCCCGGAccGCCGCGGUcgggGGCcccucgUCCCg -3'
miRNA:   3'- caGGGCCUccUGGUGUCA----CCGa-----AGGG- -5'
5743 3' -58.8 NC_001806.1 + 146796 0.67 0.735448
Target:  5'- -aCUCGGGGGGCauCAC-GUGGUUaCCCg -3'
miRNA:   3'- caGGGCCUCCUG--GUGuCACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 97593 0.67 0.735448
Target:  5'- -aCCUGGGGGACUGCAucGGCaaggacgCCCg -3'
miRNA:   3'- caGGGCCUCCUGGUGUcaCCGaa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 121564 0.67 0.735448
Target:  5'- -aCCCGGGGGGCUGCgAGUccuGCgcCCCg -3'
miRNA:   3'- caGGGCCUCCUGGUG-UCAc--CGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 147502 0.67 0.73449
Target:  5'- --gCCGGAGGgggcggcGCCGCGGgagGGCccgugCCCa -3'
miRNA:   3'- cagGGCCUCC-------UGGUGUCa--CCGaa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 26222 0.67 0.73449
Target:  5'- -cCCCGGGGGucgcgcgcgGCCcuuuaaaGCGGUGGCggcgggcagCCCg -3'
miRNA:   3'- caGGGCCUCC---------UGG-------UGUCACCGaa-------GGG- -5'
5743 3' -58.8 NC_001806.1 + 130735 0.67 0.725829
Target:  5'- cGUCCCGGAGaGCUggaGCucGUGGCccugCCCc -3'
miRNA:   3'- -CAGGGCCUCcUGG---UGu-CACCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 34352 0.67 0.724862
Target:  5'- -cCCCGGggaacggGGGACCGgGGcugGGUaUCCCg -3'
miRNA:   3'- caGGGCC-------UCCUGGUgUCa--CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 150120 0.68 0.716132
Target:  5'- cGUCCCcGGGGACCAacccGGCgccCCCa -3'
miRNA:   3'- -CAGGGcCUCCUGGUgucaCCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 19358 0.68 0.713209
Target:  5'- -cUCCGGGGGGCCcuacggccaccgauGCGGggGGCUucaUCCUg -3'
miRNA:   3'- caGGGCCUCCUGG--------------UGUCa-CCGA---AGGG- -5'
5743 3' -58.8 NC_001806.1 + 3954 0.68 0.696541
Target:  5'- cGUCCCcGGGGACCACGcGcGGgUUCUg -3'
miRNA:   3'- -CAGGGcCUCCUGGUGU-CaCCgAAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.