miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 50202 0.69 0.643802
Target:  5'- -gCCCGGGgugcgcgcgcugcuGGACCGCGacugucgcGUGGCcgCCCg -3'
miRNA:   3'- caGGGCCU--------------CCUGGUGU--------CACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 52711 0.68 0.666788
Target:  5'- gGUUCCGGAGGcGCCGCGcGgacGGCgcggggCCCc -3'
miRNA:   3'- -CAGGGCCUCC-UGGUGU-Ca--CCGaa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 55737 0.66 0.799893
Target:  5'- -aCCCGGGGGACCcCGauGUGGgggCCUc -3'
miRNA:   3'- caGGGCCUCCUGGuGU--CACCgaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 56506 0.67 0.763755
Target:  5'- -aCCUGG-GG-CCACAGcGGCaggCCCg -3'
miRNA:   3'- caGGGCCuCCuGGUGUCaCCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 57368 0.68 0.693583
Target:  5'- -cUCCGGGGacacGGCC-CGGUGGCUgucguugcggagcaUCCCg -3'
miRNA:   3'- caGGGCCUC----CUGGuGUCACCGA--------------AGGG- -5'
5743 3' -58.8 NC_001806.1 + 64675 0.69 0.606764
Target:  5'- uGUCCUGGGGGGgaCACGcuUGGUUUCCUc -3'
miRNA:   3'- -CAGGGCCUCCUg-GUGUc-ACCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 66800 0.69 0.606764
Target:  5'- -gCCgGGAGGAUCACGGccgagcggGGCcggCCCg -3'
miRNA:   3'- caGGgCCUCCUGGUGUCa-------CCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 67993 0.76 0.275859
Target:  5'- gGUCCUGGAGGGCCGCGG-GGgaUCg- -3'
miRNA:   3'- -CAGGGCCUCCUGGUGUCaCCgaAGgg -5'
5743 3' -58.8 NC_001806.1 + 70644 0.67 0.772979
Target:  5'- -aCCUGGGGGugUGCgacgAGcUGGCggCCCa -3'
miRNA:   3'- caGGGCCUCCugGUG----UC-ACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 71422 0.66 0.791056
Target:  5'- aUCCCGGAGGA-CACcGUcGCgccaCCCa -3'
miRNA:   3'- cAGGGCCUCCUgGUGuCAcCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 73440 0.67 0.763755
Target:  5'- -gCCCGGAcgcacacccaGGCCGgGGUGGCcggCCCg -3'
miRNA:   3'- caGGGCCUc---------CUGGUgUCACCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 73989 0.66 0.799893
Target:  5'- -cCCCGGccGGGGcggccCCGCAGggGGCUccgcgCCCa -3'
miRNA:   3'- caGGGCC--UCCU-----GGUGUCa-CCGAa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 74361 0.66 0.782082
Target:  5'- -cCCCcGAGGACCugGCGGccUGGCUcUCCg -3'
miRNA:   3'- caGGGcCUCCUGG--UGUC--ACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 76293 0.66 0.799893
Target:  5'- -gCCgCGGAGGAgauauCCGCGGUGcGCaacgaCCCg -3'
miRNA:   3'- caGG-GCCUCCU-----GGUGUCAC-CGaa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 77602 0.69 0.606764
Target:  5'- gGUCCCGGAuGGAacgccaCUGCAGUacgcgcucuGCUUCCCg -3'
miRNA:   3'- -CAGGGCCU-CCU------GGUGUCAc--------CGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 80013 0.66 0.817123
Target:  5'- uUCCCguaGGcGGGCCGCAGcGGCgccuuacgcgCCCc -3'
miRNA:   3'- cAGGG---CCuCCUGGUGUCaCCGaa--------GGG- -5'
5743 3' -58.8 NC_001806.1 + 80263 0.66 0.799893
Target:  5'- -gCCCGGAGG-CCc----GGUUUCCCg -3'
miRNA:   3'- caGGGCCUCCuGGugucaCCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 82509 0.66 0.817123
Target:  5'- -aCCUGGGuGGCCGguGUagGGCUUgCCCa -3'
miRNA:   3'- caGGGCCUcCUGGUguCA--CCGAA-GGG- -5'
5743 3' -58.8 NC_001806.1 + 85982 0.73 0.384658
Target:  5'- cUCCCGGGGGGuCgGCAGgcgacGGCgucUCCCg -3'
miRNA:   3'- cAGGGCCUCCU-GgUGUCa----CCGa--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 86026 0.67 0.762827
Target:  5'- --gCCGGggagggcAGGGCCGCGGggggggcgGGCUcgUCCCc -3'
miRNA:   3'- cagGGCC-------UCCUGGUGUCa-------CCGA--AGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.