miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 114509 0.69 0.636792
Target:  5'- uUCgCCGGGGccGACCAC-GUGGCgaacgcgCCCa -3'
miRNA:   3'- cAG-GGCCUC--CUGGUGuCACCGaa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 103489 0.67 0.75442
Target:  5'- -aCCCGG-GGGCUguugucgGGUGGCU-CCCg -3'
miRNA:   3'- caGGGCCuCCUGGug-----UCACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 102339 0.68 0.686664
Target:  5'- cGUCCCGGGGGAcgucCCcCGG-GGCcgCCg -3'
miRNA:   3'- -CAGGGCCUCCU----GGuGUCaCCGaaGGg -5'
5743 3' -58.8 NC_001806.1 + 102066 0.71 0.50879
Target:  5'- -aCCCGGAGGccCCACGGgcgaUGGCcUCCg -3'
miRNA:   3'- caGGGCCUCCu-GGUGUC----ACCGaAGGg -5'
5743 3' -58.8 NC_001806.1 + 97593 0.67 0.735448
Target:  5'- -aCCUGGGGGACUGCAucGGCaaggacgCCCg -3'
miRNA:   3'- caGGGCCUCCUGGUGUcaCCGaa-----GGG- -5'
5743 3' -58.8 NC_001806.1 + 96786 0.69 0.656806
Target:  5'- gGUCagaacuacaCGGAGGGCuCGCGGUGGuCUUCa- -3'
miRNA:   3'- -CAGg--------GCCUCCUG-GUGUCACC-GAAGgg -5'
5743 3' -58.8 NC_001806.1 + 90343 0.68 0.686664
Target:  5'- -gCUCGGGGGuACCGCGGUG---UCCCu -3'
miRNA:   3'- caGGGCCUCC-UGGUGUCACcgaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 86026 0.67 0.762827
Target:  5'- --gCCGGggagggcAGGGCCGCGGggggggcgGGCUcgUCCCc -3'
miRNA:   3'- cagGGCC-------UCCUGGUGUCa-------CCGA--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 85982 0.73 0.384658
Target:  5'- cUCCCGGGGGGuCgGCAGgcgacGGCgucUCCCg -3'
miRNA:   3'- cAGGGCCUCCU-GgUGUCa----CCGa--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 82509 0.66 0.817123
Target:  5'- -aCCUGGGuGGCCGguGUagGGCUUgCCCa -3'
miRNA:   3'- caGGGCCUcCUGGUguCA--CCGAA-GGG- -5'
5743 3' -58.8 NC_001806.1 + 80263 0.66 0.799893
Target:  5'- -gCCCGGAGG-CCc----GGUUUCCCg -3'
miRNA:   3'- caGGGCCUCCuGGugucaCCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 80013 0.66 0.817123
Target:  5'- uUCCCguaGGcGGGCCGCAGcGGCgccuuacgcgCCCc -3'
miRNA:   3'- cAGGG---CCuCCUGGUGUCaCCGaa--------GGG- -5'
5743 3' -58.8 NC_001806.1 + 77602 0.69 0.606764
Target:  5'- gGUCCCGGAuGGAacgccaCUGCAGUacgcgcucuGCUUCCCg -3'
miRNA:   3'- -CAGGGCCU-CCU------GGUGUCAc--------CGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 76293 0.66 0.799893
Target:  5'- -gCCgCGGAGGAgauauCCGCGGUGcGCaacgaCCCg -3'
miRNA:   3'- caGG-GCCUCCU-----GGUGUCAC-CGaa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 74361 0.66 0.782082
Target:  5'- -cCCCcGAGGACCugGCGGccUGGCUcUCCg -3'
miRNA:   3'- caGGGcCUCCUGG--UGUC--ACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 73989 0.66 0.799893
Target:  5'- -cCCCGGccGGGGcggccCCGCAGggGGCUccgcgCCCa -3'
miRNA:   3'- caGGGCC--UCCU-----GGUGUCa-CCGAa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 73440 0.67 0.763755
Target:  5'- -gCCCGGAcgcacacccaGGCCGgGGUGGCcggCCCg -3'
miRNA:   3'- caGGGCCUc---------CUGGUgUCACCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 71422 0.66 0.791056
Target:  5'- aUCCCGGAGGA-CACcGUcGCgccaCCCa -3'
miRNA:   3'- cAGGGCCUCCUgGUGuCAcCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 70644 0.67 0.772979
Target:  5'- -aCCUGGGGGugUGCgacgAGcUGGCggCCCa -3'
miRNA:   3'- caGGGCCUCCugGUG----UC-ACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 67993 0.76 0.275859
Target:  5'- gGUCCUGGAGGGCCGCGG-GGgaUCg- -3'
miRNA:   3'- -CAGGGCCUCCUGGUGUCaCCgaAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.