miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 3' -58.8 NC_001806.1 + 151104 0.67 0.772979
Target:  5'- gGUCgCGGGGG-UCGCGGggGGCUccggcgcccccUCCCc -3'
miRNA:   3'- -CAGgGCCUCCuGGUGUCa-CCGA-----------AGGG- -5'
5743 3' -58.8 NC_001806.1 + 150120 0.68 0.716132
Target:  5'- cGUCCCcGGGGACCAacccGGCgccCCCa -3'
miRNA:   3'- -CAGGGcCUCCUGGUgucaCCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 150084 0.71 0.517377
Target:  5'- cGUCCCaggGGAGGcaggcccACCGCGG-GGCggCCCc -3'
miRNA:   3'- -CAGGG---CCUCC-------UGGUGUCaCCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 147681 0.67 0.75442
Target:  5'- -cCCCGG-GGGCCggggcGCGGgGGCgggCCCc -3'
miRNA:   3'- caGGGCCuCCUGG-----UGUCaCCGaa-GGG- -5'
5743 3' -58.8 NC_001806.1 + 147502 0.67 0.73449
Target:  5'- --gCCGGAGGgggcggcGCCGCGGgagGGCccgugCCCa -3'
miRNA:   3'- cagGGCCUCC-------UGGUGUCa--CCGaa---GGG- -5'
5743 3' -58.8 NC_001806.1 + 146796 0.67 0.735448
Target:  5'- -aCUCGGGGGGCauCAC-GUGGUUaCCCg -3'
miRNA:   3'- caGGGCCUCCUG--GUGuCACCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 145649 0.67 0.772979
Target:  5'- gGUgCCGGGGGACCGgGGUGa--UCUCu -3'
miRNA:   3'- -CAgGGCCUCCUGGUgUCACcgaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 143129 0.73 0.421534
Target:  5'- -gCCgGGAGGgGCCGCGGaugggcgggccuacuUGGUUUCCCg -3'
miRNA:   3'- caGGgCCUCC-UGGUGUC---------------ACCGAAGGG- -5'
5743 3' -58.8 NC_001806.1 + 136920 0.74 0.36077
Target:  5'- cGUCCuCGGGGGAgCACAGc-GCUUCCg -3'
miRNA:   3'- -CAGG-GCCUCCUgGUGUCacCGAAGGg -5'
5743 3' -58.8 NC_001806.1 + 136208 0.67 0.755358
Target:  5'- gGUCCacaaGGGGGGCCACAGcaccagacauucuccGcGCUgCCCg -3'
miRNA:   3'- -CAGGg---CCUCCUGGUGUCa--------------C-CGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 133699 0.69 0.626777
Target:  5'- uGUCCCGGAGGcggggaguCGGUcGGCgUCCCc -3'
miRNA:   3'- -CAGGGCCUCCuggu----GUCA-CCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 132780 0.7 0.576897
Target:  5'- gGUgCgGGAGGcgguGgCGCGGUGGCaUCCCg -3'
miRNA:   3'- -CAgGgCCUCC----UgGUGUCACCGaAGGG- -5'
5743 3' -58.8 NC_001806.1 + 130735 0.67 0.725829
Target:  5'- cGUCCCGGAGaGCUggaGCucGUGGCccugCCCc -3'
miRNA:   3'- -CAGGGCCUCcUGG---UGu-CACCGaa--GGG- -5'
5743 3' -58.8 NC_001806.1 + 129714 0.69 0.636792
Target:  5'- -gCCCGGGGGGCCACguucuuuggggAGUGGaagcgcgCCUu -3'
miRNA:   3'- caGGGCCUCCUGGUG-----------UCACCgaa----GGG- -5'
5743 3' -58.8 NC_001806.1 + 126869 0.66 0.791056
Target:  5'- -gCCUGGAGGACgGCGccggGGCU-CUCg -3'
miRNA:   3'- caGGGCCUCCUGgUGUca--CCGAaGGG- -5'
5743 3' -58.8 NC_001806.1 + 122340 0.67 0.744981
Target:  5'- --gCCGGGGGACgagaaaCACGGUGGCgcgCUg -3'
miRNA:   3'- cagGGCCUCCUG------GUGUCACCGaa-GGg -5'
5743 3' -58.8 NC_001806.1 + 121564 0.67 0.735448
Target:  5'- -aCCCGGGGGGCUGCgAGUccuGCgcCCCg -3'
miRNA:   3'- caGGGCCUCCUGGUG-UCAc--CGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 121432 0.7 0.557164
Target:  5'- -gCCCGG-GGGCC-UGGUGGCaccUCCCc -3'
miRNA:   3'- caGGGCCuCCUGGuGUCACCGa--AGGG- -5'
5743 3' -58.8 NC_001806.1 + 119608 0.73 0.418094
Target:  5'- -cCCCGGcgGGGGCCGCuuuGUGGC--CCCa -3'
miRNA:   3'- caGGGCC--UCCUGGUGu--CACCGaaGGG- -5'
5743 3' -58.8 NC_001806.1 + 117660 0.66 0.817123
Target:  5'- cUCCCgGGAGGcUCGCAGUGGUa---- -3'
miRNA:   3'- cAGGG-CCUCCuGGUGUCACCGaaggg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.