miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 5' -56.3 NC_001806.1 + 148664 0.66 0.908316
Target:  5'- cACGGgauGCAG-AAGCGGUgCAUGCA-CGg -3'
miRNA:   3'- -UGCU---CGUCcUUCGCCAgGUGCGUuGC- -5'
5743 5' -56.3 NC_001806.1 + 129074 0.66 0.908316
Target:  5'- cGCGAGCgccccgacggccAGGugcgugacuGUGGUCCGCGCGcCa -3'
miRNA:   3'- -UGCUCG------------UCCuu-------CGCCAGGUGCGUuGc -5'
5743 5' -56.3 NC_001806.1 + 106319 0.66 0.908316
Target:  5'- gGCGAGCcacccGAGCGGgCCGCGUGAUa -3'
miRNA:   3'- -UGCUCGucc--UUCGCCaGGUGCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 91006 0.66 0.908316
Target:  5'- gGCGGGCGcgacGGcGGCGG-CaaggGCGCGGCGg -3'
miRNA:   3'- -UGCUCGU----CCuUCGCCaGg---UGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 54096 0.66 0.902121
Target:  5'- cGCG-GCGGGGAGCcgagCC-CGCAugGg -3'
miRNA:   3'- -UGCuCGUCCUUCGcca-GGuGCGUugC- -5'
5743 5' -56.3 NC_001806.1 + 70691 0.66 0.902121
Target:  5'- aACGuGCuGGccGUGGUCCgGCGCGAa- -3'
miRNA:   3'- -UGCuCGuCCuuCGCCAGG-UGCGUUgc -5'
5743 5' -56.3 NC_001806.1 + 48304 0.66 0.902121
Target:  5'- -aGAgGCGGGGcuGGCGGcUCCGCGCc--- -3'
miRNA:   3'- ugCU-CGUCCU--UCGCC-AGGUGCGuugc -5'
5743 5' -56.3 NC_001806.1 + 75592 0.66 0.896347
Target:  5'- cGCGcccuGCAGGAGcUGGgaaaggucaucggcgCCACGCGACGc -3'
miRNA:   3'- -UGCu---CGUCCUUcGCCa--------------GGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 20396 0.66 0.895694
Target:  5'- gGCGGGCGGGAccgGGgGGcCCG-GgGACGg -3'
miRNA:   3'- -UGCUCGUCCU---UCgCCaGGUgCgUUGC- -5'
5743 5' -56.3 NC_001806.1 + 13252 0.66 0.895694
Target:  5'- cACGAgccGCAGGuacgugccGGCGGUCUcaaACGCGGgGg -3'
miRNA:   3'- -UGCU---CGUCCu-------UCGCCAGG---UGCGUUgC- -5'
5743 5' -56.3 NC_001806.1 + 117630 0.66 0.895694
Target:  5'- uUGAGCAGGAaaaAGgGGUacagcaCCGCGCuccCGg -3'
miRNA:   3'- uGCUCGUCCU---UCgCCA------GGUGCGuu-GC- -5'
5743 5' -56.3 NC_001806.1 + 86083 0.66 0.895694
Target:  5'- aGCucGCGGaGGGCGGccagCCGCGCGACc -3'
miRNA:   3'- -UGcuCGUCcUUCGCCa---GGUGCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 88941 0.66 0.895694
Target:  5'- -gGGGUugaaccccgccGGGgcGUGGUCCACGCcGCc -3'
miRNA:   3'- ugCUCG-----------UCCuuCGCCAGGUGCGuUGc -5'
5743 5' -56.3 NC_001806.1 + 76553 0.66 0.889038
Target:  5'- gGCGGggcuGCGGGAGGUGcuggCCGCGC-GCGa -3'
miRNA:   3'- -UGCU----CGUCCUUCGCca--GGUGCGuUGC- -5'
5743 5' -56.3 NC_001806.1 + 142160 0.66 0.882158
Target:  5'- cCGucGCGGGguGgGGUCCgACGUGGCGa -3'
miRNA:   3'- uGCu-CGUCCuuCgCCAGG-UGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 134241 0.66 0.875056
Target:  5'- -gGAGCgGGGggGCGGcCC-CgGCAGCc -3'
miRNA:   3'- ugCUCG-UCCuuCGCCaGGuG-CGUUGc -5'
5743 5' -56.3 NC_001806.1 + 5377 0.66 0.875056
Target:  5'- gGCGAGCGucugacGGucugucucuGGCGGUCC-CGCGuCGg -3'
miRNA:   3'- -UGCUCGU------CCu--------UCGCCAGGuGCGUuGC- -5'
5743 5' -56.3 NC_001806.1 + 52124 0.66 0.875056
Target:  5'- gGCGcuCAGGGcGGCGGUCa--GCGACGu -3'
miRNA:   3'- -UGCucGUCCU-UCGCCAGgugCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 5938 0.66 0.875056
Target:  5'- gGCGGGCGGGAccgccccaagggGGCGGggccgCCGgGUAAa- -3'
miRNA:   3'- -UGCUCGUCCU------------UCGCCa----GGUgCGUUgc -5'
5743 5' -56.3 NC_001806.1 + 3280 0.66 0.875056
Target:  5'- cGCGcGCAGGcgGGGCGcGUCgGCGUgcGGCGg -3'
miRNA:   3'- -UGCuCGUCC--UUCGC-CAGgUGCG--UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.