Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5745 | 3' | -61.9 | NC_001806.1 | + | 18495 | 1.1 | 0.000643 |
Target: 5'- gCAGACAGCCAGGGCUGGGAGCCCUCCu -3' miRNA: 3'- -GUCUGUCGGUCCCGACCCUCGGGAGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 130844 | 0.75 | 0.185788 |
Target: 5'- -cGGCGGCCGGGGgauCUGGGAGgaCCUUCg -3' miRNA: 3'- guCUGUCGGUCCC---GACCCUCg-GGAGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 119758 | 0.75 | 0.204613 |
Target: 5'- -cGACGGCCGGacuGGCUGuGGAGCCgUCg -3' miRNA: 3'- guCUGUCGGUC---CCGAC-CCUCGGgAGg -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 135862 | 0.73 | 0.283828 |
Target: 5'- -cGACGGCCGGGGCgucuaucaGGuGCCCcCCg -3' miRNA: 3'- guCUGUCGGUCCCGac------CCuCGGGaGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 22871 | 0.73 | 0.283828 |
Target: 5'- -uGGCGGCCgucccGGGGCUGgccGGGGCCCggcCCg -3' miRNA: 3'- guCUGUCGG-----UCCCGAC---CCUCGGGa--GG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 95376 | 0.73 | 0.283828 |
Target: 5'- gGGGCA-CgGGGGUUGGGAGCUC-CCg -3' miRNA: 3'- gUCUGUcGgUCCCGACCCUCGGGaGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 20715 | 0.72 | 0.289673 |
Target: 5'- gGGugGGCCcgccgggGGGGCgGGGGGCcggcggCCUCCg -3' miRNA: 3'- gUCugUCGG-------UCCCGaCCCUCG------GGAGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 151549 | 0.72 | 0.290328 |
Target: 5'- cCGGGCGGCCgGGGGCggcGGGGGCCg--- -3' miRNA: 3'- -GUCUGUCGG-UCCCGa--CCCUCGGgagg -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 56847 | 0.72 | 0.296945 |
Target: 5'- --cGCGGCCAGGGCggccgcGGcGGGCCCaCCg -3' miRNA: 3'- gucUGUCGGUCCCGa-----CC-CUCGGGaGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 41613 | 0.72 | 0.310527 |
Target: 5'- -cGAUcGCCGGGGgUGuGGGGCCCUgCu -3' miRNA: 3'- guCUGuCGGUCCCgAC-CCUCGGGAgG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 128054 | 0.72 | 0.316792 |
Target: 5'- -uGGCGGCCAcGGCccccaggUGGGGGCCCaCCa -3' miRNA: 3'- guCUGUCGGUcCCG-------ACCCUCGGGaGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 62466 | 0.72 | 0.317494 |
Target: 5'- aAGGCGGaCCAGGGUggaggcUGGGAGgguCCCgUCCg -3' miRNA: 3'- gUCUGUC-GGUCCCG------ACCCUC---GGG-AGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 51137 | 0.72 | 0.324577 |
Target: 5'- gAGGCGcGCgAccGGGCUGGGAGgCCCgCCa -3' miRNA: 3'- gUCUGU-CGgU--CCCGACCCUC-GGGaGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 77297 | 0.72 | 0.324577 |
Target: 5'- uGGGCGGuggaggaguuCCGGGGCgcgcGGGAGCUCaUCCa -3' miRNA: 3'- gUCUGUC----------GGUCCCGa---CCCUCGGG-AGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 30036 | 0.71 | 0.331778 |
Target: 5'- gGGGCGGCCgaGGGGCcGGacGGGCCC-CCu -3' miRNA: 3'- gUCUGUCGG--UCCCGaCC--CUCGGGaGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 101939 | 0.71 | 0.339095 |
Target: 5'- aGGGCGGCCAGGccgggaaacaGCUGGGucAGCUCgaccgCCg -3' miRNA: 3'- gUCUGUCGGUCC----------CGACCC--UCGGGa----GG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 130071 | 0.71 | 0.354078 |
Target: 5'- uGGACGGCUccGGGGCgcgcucGGAGCCCgUCUu -3' miRNA: 3'- gUCUGUCGG--UCCCGac----CCUCGGG-AGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 2940 | 0.71 | 0.360971 |
Target: 5'- cCGGGCGGCCGggccGGGCcGGGAcucuugcgcuugcGCcCCUCCc -3' miRNA: 3'- -GUCUGUCGGU----CCCGaCCCU-------------CG-GGAGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 30417 | 0.71 | 0.361743 |
Target: 5'- gGGGgGGCCGGGcGUggagggUGGGcacgGGCCCUCCc -3' miRNA: 3'- gUCUgUCGGUCC-CG------ACCC----UCGGGAGG- -5' |
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5745 | 3' | -61.9 | NC_001806.1 | + | 5096 | 0.71 | 0.371878 |
Target: 5'- -cGGCGGCCcgucgguGGGGCccgGGGAGCCggggcgcugcuuguuCUCCg -3' miRNA: 3'- guCUGUCGG-------UCCCGa--CCCUCGG---------------GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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