miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5745 3' -61.9 NC_001806.1 + 150866 0.66 0.654758
Target:  5'- cCGGGCcggcuccgcgGGCCAGGGCccGGGcacGGgCCUCg -3'
miRNA:   3'- -GUCUG----------UCGGUCCCGa-CCC---UCgGGAGg -5'
5745 3' -61.9 NC_001806.1 + 51137 0.72 0.324577
Target:  5'- gAGGCGcGCgAccGGGCUGGGAGgCCCgCCa -3'
miRNA:   3'- gUCUGU-CGgU--CCCGACCCUC-GGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 77297 0.72 0.324577
Target:  5'- uGGGCGGuggaggaguuCCGGGGCgcgcGGGAGCUCaUCCa -3'
miRNA:   3'- gUCUGUC----------GGUCCCGa---CCCUCGGG-AGG- -5'
5745 3' -61.9 NC_001806.1 + 30036 0.71 0.331778
Target:  5'- gGGGCGGCCgaGGGGCcGGacGGGCCC-CCu -3'
miRNA:   3'- gUCUGUCGG--UCCCGaCC--CUCGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 101939 0.71 0.339095
Target:  5'- aGGGCGGCCAGGccgggaaacaGCUGGGucAGCUCgaccgCCg -3'
miRNA:   3'- gUCUGUCGGUCC----------CGACCC--UCGGGa----GG- -5'
5745 3' -61.9 NC_001806.1 + 130071 0.71 0.354078
Target:  5'- uGGACGGCUccGGGGCgcgcucGGAGCCCgUCUu -3'
miRNA:   3'- gUCUGUCGG--UCCCGac----CCUCGGG-AGG- -5'
5745 3' -61.9 NC_001806.1 + 2940 0.71 0.360971
Target:  5'- cCGGGCGGCCGggccGGGCcGGGAcucuugcgcuugcGCcCCUCCc -3'
miRNA:   3'- -GUCUGUCGGU----CCCGaCCCU-------------CG-GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 30417 0.71 0.361743
Target:  5'- gGGGgGGCCGGGcGUggagggUGGGcacgGGCCCUCCc -3'
miRNA:   3'- gUCUgUCGGUCC-CG------ACCC----UCGGGAGG- -5'
5745 3' -61.9 NC_001806.1 + 5096 0.71 0.371878
Target:  5'- -cGGCGGCCcgucgguGGGGCccgGGGAGCCggggcgcugcuuguuCUCCg -3'
miRNA:   3'- guCUGUCGG-------UCCCGa--CCCUCGG---------------GAGG- -5'
5745 3' -61.9 NC_001806.1 + 62466 0.72 0.317494
Target:  5'- aAGGCGGaCCAGGGUggaggcUGGGAGgguCCCgUCCg -3'
miRNA:   3'- gUCUGUC-GGUCCCG------ACCCUC---GGG-AGG- -5'
5745 3' -61.9 NC_001806.1 + 128054 0.72 0.316792
Target:  5'- -uGGCGGCCAcGGCccccaggUGGGGGCCCaCCa -3'
miRNA:   3'- guCUGUCGGUcCCG-------ACCCUCGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 41613 0.72 0.310527
Target:  5'- -cGAUcGCCGGGGgUGuGGGGCCCUgCu -3'
miRNA:   3'- guCUGuCGGUCCCgAC-CCUCGGGAgG- -5'
5745 3' -61.9 NC_001806.1 + 130844 0.75 0.185788
Target:  5'- -cGGCGGCCGGGGgauCUGGGAGgaCCUUCg -3'
miRNA:   3'- guCUGUCGGUCCC---GACCCUCg-GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 119758 0.75 0.204613
Target:  5'- -cGACGGCCGGacuGGCUGuGGAGCCgUCg -3'
miRNA:   3'- guCUGUCGGUC---CCGAC-CCUCGGgAGg -5'
5745 3' -61.9 NC_001806.1 + 95376 0.73 0.283828
Target:  5'- gGGGCA-CgGGGGUUGGGAGCUC-CCg -3'
miRNA:   3'- gUCUGUcGgUCCCGACCCUCGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 22871 0.73 0.283828
Target:  5'- -uGGCGGCCgucccGGGGCUGgccGGGGCCCggcCCg -3'
miRNA:   3'- guCUGUCGG-----UCCCGAC---CCUCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 135862 0.73 0.283828
Target:  5'- -cGACGGCCGGGGCgucuaucaGGuGCCCcCCg -3'
miRNA:   3'- guCUGUCGGUCCCGac------CCuCGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 20715 0.72 0.289673
Target:  5'- gGGugGGCCcgccgggGGGGCgGGGGGCcggcggCCUCCg -3'
miRNA:   3'- gUCugUCGG-------UCCCGaCCCUCG------GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 151549 0.72 0.290328
Target:  5'- cCGGGCGGCCgGGGGCggcGGGGGCCg--- -3'
miRNA:   3'- -GUCUGUCGG-UCCCGa--CCCUCGGgagg -5'
5745 3' -61.9 NC_001806.1 + 56847 0.72 0.296945
Target:  5'- --cGCGGCCAGGGCggccgcGGcGGGCCCaCCg -3'
miRNA:   3'- gucUGUCGGUCCCGa-----CC-CUCGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.