miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5745 3' -61.9 NC_001806.1 + 2507 0.66 0.644857
Target:  5'- gCAcGCGGCCuGGGCggcgGGGgcgGGCCCggcgcaCCg -3'
miRNA:   3'- -GUcUGUCGGuCCCGa---CCC---UCGGGa-----GG- -5'
5745 3' -61.9 NC_001806.1 + 2624 0.66 0.615126
Target:  5'- gAGcuCGGCCAcGGCgcgcgGGGAGCaguaggCCUCCa -3'
miRNA:   3'- gUCu-GUCGGUcCCGa----CCCUCG------GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 2756 0.66 0.605231
Target:  5'- --cACGGCCacGGGGCgcgGGcGGGCCUgcgCCg -3'
miRNA:   3'- gucUGUCGG--UCCCGa--CC-CUCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 2797 0.66 0.605231
Target:  5'- gGGGC-GCCGcGGGCUGGGcgggggcgGGCUCgggCCc -3'
miRNA:   3'- gUCUGuCGGU-CCCGACCC--------UCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 2940 0.71 0.360971
Target:  5'- cCGGGCGGCCGggccGGGCcGGGAcucuugcgcuugcGCcCCUCCc -3'
miRNA:   3'- -GUCUGUCGGU----CCCGaCCCU-------------CG-GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 4169 0.68 0.527264
Target:  5'- aCAGcACccGCCccgGGGGC-GGGGGCCCggcgCCg -3'
miRNA:   3'- -GUC-UGu-CGG---UCCCGaCCCUCGGGa---GG- -5'
5745 3' -61.9 NC_001806.1 + 5096 0.71 0.371878
Target:  5'- -cGGCGGCCcgucgguGGGGCccgGGGAGCCggggcgcugcuuguuCUCCg -3'
miRNA:   3'- guCUGUCGG-------UCCCGa--CCCUCGG---------------GAGG- -5'
5745 3' -61.9 NC_001806.1 + 6080 0.69 0.435743
Target:  5'- gGGGCgGGCCcGGGCggcgGGGGGCgggucUCUCCg -3'
miRNA:   3'- gUCUG-UCGGuCCCGa---CCCUCG-----GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 9716 0.66 0.644857
Target:  5'- gCAGACAGCagCAGGGC----GGCCC-CCa -3'
miRNA:   3'- -GUCUGUCG--GUCCCGacccUCGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 11018 0.67 0.595355
Target:  5'- aUAG-CAGCCGaucuucGGGUaaaaUGGGAGCCCa-- -3'
miRNA:   3'- -GUCuGUCGGU------CCCG----ACCCUCGGGagg -5'
5745 3' -61.9 NC_001806.1 + 14079 0.69 0.427093
Target:  5'- uGGuuAGCCcGGuguuGUUGGGuGCCCUCCg -3'
miRNA:   3'- gUCugUCGGuCC----CGACCCuCGGGAGG- -5'
5745 3' -61.9 NC_001806.1 + 18495 1.1 0.000643
Target:  5'- gCAGACAGCCAGGGCUGGGAGCCCUCCu -3'
miRNA:   3'- -GUCUGUCGGUCCCGACCCUCGGGAGG- -5'
5745 3' -61.9 NC_001806.1 + 18589 0.67 0.595355
Target:  5'- gGGuuucCAGCguaaCGGGGgaGGGGGCauCCUCCg -3'
miRNA:   3'- gUCu---GUCG----GUCCCgaCCCUCG--GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 19096 0.69 0.453342
Target:  5'- uGGGCuuggGGCCGacGGGgUGGGGGCCCggggCUg -3'
miRNA:   3'- gUCUG----UCGGU--CCCgACCCUCGGGa---GG- -5'
5745 3' -61.9 NC_001806.1 + 20419 0.67 0.585503
Target:  5'- gGGACGGCCAacGGGCgcgcGGGGCUCg-- -3'
miRNA:   3'- gUCUGUCGGU--CCCGac--CCUCGGGagg -5'
5745 3' -61.9 NC_001806.1 + 20616 0.68 0.517753
Target:  5'- gCGGAUGGgCGGGGCcGGGGGUUCgaCCa -3'
miRNA:   3'- -GUCUGUCgGUCCCGaCCCUCGGGa-GG- -5'
5745 3' -61.9 NC_001806.1 + 20715 0.72 0.289673
Target:  5'- gGGugGGCCcgccgggGGGGCgGGGGGCcggcggCCUCCg -3'
miRNA:   3'- gUCugUCGG-------UCCCGaCCCUCG------GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 21182 0.66 0.615126
Target:  5'- cCAGACcGCgAcGaGCgGGGGGCCCUCg -3'
miRNA:   3'- -GUCUGuCGgUcC-CGaCCCUCGGGAGg -5'
5745 3' -61.9 NC_001806.1 + 21965 0.66 0.638911
Target:  5'- cCGGGCAGCCccGGCgGGucGAGCuggacgccgacgcgaCCUCCg -3'
miRNA:   3'- -GUCUGUCGGucCCGaCC--CUCG---------------GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 22110 0.68 0.489652
Target:  5'- -cGACAGCCGcccGGGCcucugGGGGGCgC-CCg -3'
miRNA:   3'- guCUGUCGGU---CCCGa----CCCUCGgGaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.