miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5747 5' -53.6 NC_001806.1 + 23079 0.66 0.972151
Target:  5'- gCCGCCGUGCGcgccgUGaGCCU----GGUCg -3'
miRNA:   3'- gGGCGGCACGC-----AC-CGGAauguUUAGa -5'
5747 5' -53.6 NC_001806.1 + 62390 0.66 0.972151
Target:  5'- cCCCGCUGUugGUcGCCUUGCGAAcCUu -3'
miRNA:   3'- -GGGCGGCAcgCAcCGGAAUGUUUaGA- -5'
5747 5' -53.6 NC_001806.1 + 20721 0.66 0.966112
Target:  5'- gCCCGCCGgggggGCGgggGGCCggcgGCcuccgCUg -3'
miRNA:   3'- -GGGCGGCa----CGCa--CCGGaa--UGuuua-GA- -5'
5747 5' -53.6 NC_001806.1 + 2679 0.66 0.962769
Target:  5'- gCCGCCGUGUGgcugGGCCc--CGGGggCUg -3'
miRNA:   3'- gGGCGGCACGCa---CCGGaauGUUUa-GA- -5'
5747 5' -53.6 NC_001806.1 + 107530 0.66 0.959204
Target:  5'- uUCGCCaUGCGcGGCCUcccUGCGcuuuGAUCUa -3'
miRNA:   3'- gGGCGGcACGCaCCGGA---AUGU----UUAGA- -5'
5747 5' -53.6 NC_001806.1 + 139270 0.66 0.959204
Target:  5'- cCCUGCCuuaCGUGGUCUUGCGGGa-- -3'
miRNA:   3'- -GGGCGGcacGCACCGGAAUGUUUaga -5'
5747 5' -53.6 NC_001806.1 + 80047 0.68 0.927658
Target:  5'- cCCCGCUGUcGCGUcGCUgucCGAAUCg -3'
miRNA:   3'- -GGGCGGCA-CGCAcCGGaauGUUUAGa -5'
5747 5' -53.6 NC_001806.1 + 76883 0.68 0.927658
Target:  5'- aCCCGUCGccGCGUcgaGGCCcUGCGgaGGUCUc -3'
miRNA:   3'- -GGGCGGCa-CGCA---CCGGaAUGU--UUAGA- -5'
5747 5' -53.6 NC_001806.1 + 88950 0.68 0.92218
Target:  5'- cCCCGCCGggGCGUGGUCc-ACGc---- -3'
miRNA:   3'- -GGGCGGCa-CGCACCGGaaUGUuuaga -5'
5747 5' -53.6 NC_001806.1 + 4498 0.68 0.91049
Target:  5'- gCCCGCgccucgCGUGCGUGGUCggcCGcGUCg -3'
miRNA:   3'- -GGGCG------GCACGCACCGGaauGUuUAGa -5'
5747 5' -53.6 NC_001806.1 + 122532 0.68 0.91049
Target:  5'- uCCgGCCGUGgGUGGCCa--------- -3'
miRNA:   3'- -GGgCGGCACgCACCGGaauguuuaga -5'
5747 5' -53.6 NC_001806.1 + 49963 0.68 0.91049
Target:  5'- gCCGUCGUGCGgcUGGCCaucaACGGGUg- -3'
miRNA:   3'- gGGCGGCACGC--ACCGGaa--UGUUUAga -5'
5747 5' -53.6 NC_001806.1 + 127758 0.68 0.90428
Target:  5'- gCUGCCGggUGCG-GGCCUgugGCGGccGUCUc -3'
miRNA:   3'- gGGCGGC--ACGCaCCGGAa--UGUU--UAGA- -5'
5747 5' -53.6 NC_001806.1 + 148504 0.68 0.90428
Target:  5'- gCCCGCCcUGaCGgccuccucGGCCUccaUGCGGGUCUg -3'
miRNA:   3'- -GGGCGGcAC-GCa-------CCGGA---AUGUUUAGA- -5'
5747 5' -53.6 NC_001806.1 + 64151 0.69 0.891144
Target:  5'- -aUGCCGcGCGUGGCCcgGCAGGc-- -3'
miRNA:   3'- ggGCGGCaCGCACCGGaaUGUUUaga -5'
5747 5' -53.6 NC_001806.1 + 110250 0.69 0.891144
Target:  5'- cCCCGaCGUGCGUuGCacagGCAGGUCUc -3'
miRNA:   3'- -GGGCgGCACGCAcCGgaa-UGUUUAGA- -5'
5747 5' -53.6 NC_001806.1 + 24018 0.69 0.884224
Target:  5'- aCCgGCUGUGCG-GGCCggACAc---- -3'
miRNA:   3'- -GGgCGGCACGCaCCGGaaUGUuuaga -5'
5747 5' -53.6 NC_001806.1 + 40939 0.69 0.884224
Target:  5'- uUCCGCCGUGgggccgacuuCGUGGC---ACAGGUCa -3'
miRNA:   3'- -GGGCGGCAC----------GCACCGgaaUGUUUAGa -5'
5747 5' -53.6 NC_001806.1 + 22971 0.69 0.862107
Target:  5'- cCCCGCCugcgcGCGUGGCUgcGCGAG-CUg -3'
miRNA:   3'- -GGGCGGca---CGCACCGGaaUGUUUaGA- -5'
5747 5' -53.6 NC_001806.1 + 22786 0.69 0.862107
Target:  5'- gCCCagGCCGgccGCGUGGCCgu-CGAGUg- -3'
miRNA:   3'- -GGG--CGGCa--CGCACCGGaauGUUUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.