Results 1 - 20 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 111201 | 0.66 | 0.898949 |
Target: 5'- cCCUGGGGAUaGCcUGCGcGG-CCGGGGc -3' miRNA: 3'- -GGGCCUCUGcUGuACGU-CCaGGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 151444 | 0.66 | 0.864565 |
Target: 5'- gCgGGGGGCGGCG-GCGGGgcggCCGcGGGc -3' miRNA: 3'- gGgCCUCUGCUGUaCGUCCa---GGU-CCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 10385 | 0.66 | 0.871866 |
Target: 5'- aCCUcggGGGGGCGGgGggagGCGGGagCCGGGGg -3' miRNA: 3'- -GGG---CCUCUGCUgUa---CGUCCa-GGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 24987 | 0.66 | 0.87896 |
Target: 5'- --gGGGGACGGgGUGCuguaacGGG-CCGGGAc -3' miRNA: 3'- gggCCUCUGCUgUACG------UCCaGGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 55424 | 0.66 | 0.87896 |
Target: 5'- aUCUGGAGGCGGaacucCAUGCGGGU---GGAa -3' miRNA: 3'- -GGGCCUCUGCU-----GUACGUCCAgguCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 135400 | 0.66 | 0.885841 |
Target: 5'- uCCCaGAGgcGCGACAggcgcucCAGGUCCuGGGc -3' miRNA: 3'- -GGGcCUC--UGCUGUac-----GUCCAGGuCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 100201 | 0.66 | 0.885841 |
Target: 5'- cCCCGGgauacugauGGGCGACGUGgggaGGGUaaugCUGGGAa -3' miRNA: 3'- -GGGCC---------UCUGCUGUACg---UCCA----GGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 103906 | 0.66 | 0.885841 |
Target: 5'- aCCGGAGACcuucUGCGGGacgagCCGGGu -3' miRNA: 3'- gGGCCUCUGcuguACGUCCa----GGUCCu -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 6075 | 0.66 | 0.888533 |
Target: 5'- cCCCGGGGGCGggcccgggcgGCGggggGCGGGUCUcuccggcgcacauaaAGGc -3' miRNA: 3'- -GGGCCUCUGC----------UGUa---CGUCCAGG---------------UCCu -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 62615 | 0.66 | 0.898949 |
Target: 5'- gCCGGAGGgGGUggGUGGGcUCCAGGc -3' miRNA: 3'- gGGCCUCUgCUGuaCGUCC-AGGUCCu -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 6689 | 0.66 | 0.89511 |
Target: 5'- cCCUGGAaauGGCgGACAccuuccuggacaccaUGCGGGUugggcCCAGGAc -3' miRNA: 3'- -GGGCCU---CUG-CUGU---------------ACGUCCA-----GGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 105140 | 0.66 | 0.892505 |
Target: 5'- uUCGGGGGCGGcCGUGCcGccCCAGGGu -3' miRNA: 3'- gGGCCUCUGCU-GUACGuCcaGGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 91520 | 0.66 | 0.892505 |
Target: 5'- aCCUGGAGcgcuGCGACG-GCgccgugaucgucGGGcgCCAGGAg -3' miRNA: 3'- -GGGCCUC----UGCUGUaCG------------UCCa-GGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 132684 | 0.66 | 0.892505 |
Target: 5'- uCCUGGGGGCcuGGCccGCGGuGggggCCAGGGu -3' miRNA: 3'- -GGGCCUCUG--CUGuaCGUC-Ca---GGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 144811 | 0.66 | 0.888533 |
Target: 5'- gCCCGG-GACGAgGggcccccgaccgcgGC-GGUCCGGGc -3' miRNA: 3'- -GGGCCuCUGCUgUa-------------CGuCCAGGUCCu -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 63744 | 0.67 | 0.854773 |
Target: 5'- aUCCGGAGcACGGCccGCAcgucggugugccacGGcUCCAGGu -3' miRNA: 3'- -GGGCCUC-UGCUGuaCGU--------------CC-AGGUCCu -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 95396 | 0.67 | 0.852466 |
Target: 5'- uCCCGGGGGCgggggcgaggacgaaGACcgucgccGCGGGcCCGGGGg -3' miRNA: 3'- -GGGCCUCUG---------------CUGua-----CGUCCaGGUCCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 151572 | 0.67 | 0.849363 |
Target: 5'- gCCGcGAuGGCGGCGgcgGCGGG-CCAuGGAg -3' miRNA: 3'- gGGC-CU-CUGCUGUa--CGUCCaGGU-CCU- -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 56506 | 0.67 | 0.849363 |
Target: 5'- aCCUGG-GGCcACAgcgGCAGGcCCGGGc -3' miRNA: 3'- -GGGCCuCUGcUGUa--CGUCCaGGUCCu -5' |
|||||||
5748 | 3' | -57.1 | NC_001806.1 | + | 149800 | 0.67 | 0.848582 |
Target: 5'- gCUGGGGGCGGCccucaggccgGCGGGuacucgcUCCGGGGc -3' miRNA: 3'- gGGCCUCUGCUGua--------CGUCC-------AGGUCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home