miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5748 3' -57.1 NC_001806.1 + 16265 1.11 0.001979
Target:  5'- cCCCGGAGACGACAUGCAGGUCCAGGAg -3'
miRNA:   3'- -GGGCCUCUGCUGUACGUCCAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 86741 0.77 0.307207
Target:  5'- gCCCGGGGGCGcGCAUGUcGGccgccUCCGGGAa -3'
miRNA:   3'- -GGGCCUCUGC-UGUACGuCC-----AGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 3957 0.77 0.321352
Target:  5'- cCCCGGGGACcACGcGCGGGUUCuGGAg -3'
miRNA:   3'- -GGGCCUCUGcUGUaCGUCCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 13657 0.77 0.328604
Target:  5'- cCCCGGAGGguCGGuCA-GCuGGUCCAGGAc -3'
miRNA:   3'- -GGGCCUCU--GCU-GUaCGuCCAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 22302 0.76 0.374633
Target:  5'- cCCCGGGGACGugGcGCuGGaCCAGGc -3'
miRNA:   3'- -GGGCCUCUGCugUaCGuCCaGGUCCu -5'
5748 3' -57.1 NC_001806.1 + 104005 0.74 0.442439
Target:  5'- aCCCGGAGGCG-CGagggacUGCAGGagcUUCAGGGa -3'
miRNA:   3'- -GGGCCUCUGCuGU------ACGUCC---AGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 82631 0.74 0.442439
Target:  5'- cCCCGcAGAaucugGUGCAGGUCCAGGAa -3'
miRNA:   3'- -GGGCcUCUgcug-UACGUCCAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 86414 0.73 0.487231
Target:  5'- cUCCGGAGACGguaucgucguaaaACA-GCAGGUcgaCCAGGGc -3'
miRNA:   3'- -GGGCCUCUGC-------------UGUaCGUCCA---GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 72838 0.73 0.507077
Target:  5'- gCCGaAGAagaugacgaGACAUGCGGGUCCuGGAg -3'
miRNA:   3'- gGGCcUCUg--------CUGUACGUCCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 37362 0.73 0.535999
Target:  5'- uCCUGGGGGCG-CAgcgGCAGGUUguGGu -3'
miRNA:   3'- -GGGCCUCUGCuGUa--CGUCCAGguCCu -5'
5748 3' -57.1 NC_001806.1 + 65781 0.72 0.545771
Target:  5'- gCUCGaGAGGgGACGUcgGCGGGUCCGGcGAg -3'
miRNA:   3'- -GGGC-CUCUgCUGUA--CGUCCAGGUC-CU- -5'
5748 3' -57.1 NC_001806.1 + 151292 0.71 0.61542
Target:  5'- gCCgGGGGGCGGCGgcgGUGGG-CCGGGc -3'
miRNA:   3'- -GGgCCUCUGCUGUa--CGUCCaGGUCCu -5'
5748 3' -57.1 NC_001806.1 + 119365 0.71 0.625473
Target:  5'- cCCCGGcGGCGACAcgaccGC-GGcCCAGGAc -3'
miRNA:   3'- -GGGCCuCUGCUGUa----CGuCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 148504 0.71 0.64458
Target:  5'- gCCCGcccuGACGGCcuccucggccuccAUGCGGGUCUGGGGg -3'
miRNA:   3'- -GGGCcu--CUGCUG-------------UACGUCCAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 121402 0.71 0.645585
Target:  5'- cCCCGGAGcCGggcGCGUGCugcgccuuGGGcCCGGGGg -3'
miRNA:   3'- -GGGCCUCuGC---UGUACG--------UCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 11816 0.7 0.65563
Target:  5'- --gGGGGugGAgGUGguGGUCgAGGGg -3'
miRNA:   3'- gggCCUCugCUgUACguCCAGgUCCU- -5'
5748 3' -57.1 NC_001806.1 + 117806 0.7 0.674659
Target:  5'- aCCCGGAcgccgcGAaacgcccCGGgAUGCAGGgCCAGGAc -3'
miRNA:   3'- -GGGCCU------CU-------GCUgUACGUCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 20385 0.7 0.675657
Target:  5'- uCCCGGcGucCGGCggGCGGGaCCGGGGg -3'
miRNA:   3'- -GGGCCuCu-GCUGuaCGUCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 60003 0.7 0.685623
Target:  5'- aCCCgGGGGACGGC---CGGGUCC-GGAg -3'
miRNA:   3'- -GGG-CCUCUGCUGuacGUCCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 2831 0.7 0.695547
Target:  5'- cCCCGGGGGCGugGaggggggcGCGGGcgCgGGGAg -3'
miRNA:   3'- -GGGCCUCUGCugUa-------CGUCCa-GgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.