miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5748 3' -57.1 NC_001806.1 + 1436 0.68 0.790529
Target:  5'- uCCCGGGcGGCGcCGgcgGCAGGgcccCCGGGc -3'
miRNA:   3'- -GGGCCU-CUGCuGUa--CGUCCa---GGUCCu -5'
5748 3' -57.1 NC_001806.1 + 2831 0.7 0.695547
Target:  5'- cCCCGGGGGCGugGaggggggcGCGGGcgCgGGGAg -3'
miRNA:   3'- -GGGCCUCUGCugUa-------CGUCCa-GgUCCU- -5'
5748 3' -57.1 NC_001806.1 + 3104 0.67 0.833399
Target:  5'- gCCgCGGAGcuCGGCAggcGCGGGUCCcgcggcagcgcGGGGc -3'
miRNA:   3'- -GG-GCCUCu-GCUGUa--CGUCCAGG-----------UCCU- -5'
5748 3' -57.1 NC_001806.1 + 3957 0.77 0.321352
Target:  5'- cCCCGGGGACcACGcGCGGGUUCuGGAg -3'
miRNA:   3'- -GGGCCUCUGcUGUaCGUCCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 5084 0.69 0.76309
Target:  5'- gCUCGGGGugGGCGgcgGCccgucggugGGGcCCGGGGa -3'
miRNA:   3'- -GGGCCUCugCUGUa--CG---------UCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 6075 0.66 0.888533
Target:  5'- cCCCGGGGGCGggcccgggcgGCGggggGCGGGUCUcuccggcgcacauaaAGGc -3'
miRNA:   3'- -GGGCCUCUGC----------UGUa---CGUCCAGG---------------UCCu -5'
5748 3' -57.1 NC_001806.1 + 6689 0.66 0.89511
Target:  5'- cCCUGGAaauGGCgGACAccuuccuggacaccaUGCGGGUugggcCCAGGAc -3'
miRNA:   3'- -GGGCCU---CUG-CUGU---------------ACGUCCA-----GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 10385 0.66 0.871866
Target:  5'- aCCUcggGGGGGCGGgGggagGCGGGagCCGGGGg -3'
miRNA:   3'- -GGG---CCUCUGCUgUa---CGUCCa-GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 11816 0.7 0.65563
Target:  5'- --gGGGGugGAgGUGguGGUCgAGGGg -3'
miRNA:   3'- gggCCUCugCUgUACguCCAGgUCCU- -5'
5748 3' -57.1 NC_001806.1 + 12828 0.68 0.799411
Target:  5'- gCCGGGGGaugguaaGGCGUcGCGGcGUCCuGGAu -3'
miRNA:   3'- gGGCCUCUg------CUGUA-CGUC-CAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 13657 0.77 0.328604
Target:  5'- cCCCGGAGGguCGGuCA-GCuGGUCCAGGAc -3'
miRNA:   3'- -GGGCCUCU--GCU-GUaCGuCCAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 14609 0.68 0.808147
Target:  5'- gCCCGGaAGuCGcGCAUGCuucauGGGUCCcGGGc -3'
miRNA:   3'- -GGGCC-UCuGC-UGUACG-----UCCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 16265 1.11 0.001979
Target:  5'- cCCCGGAGACGACAUGCAGGUCCAGGAg -3'
miRNA:   3'- -GGGCCUCUGCUGUACGUCCAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 20385 0.7 0.675657
Target:  5'- uCCCGGcGucCGGCggGCGGGaCCGGGGg -3'
miRNA:   3'- -GGGCCuCu-GCUGuaCGUCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 20414 0.69 0.744222
Target:  5'- gCCCGGGGACGGCcaaCGGGcgCgCGGGGc -3'
miRNA:   3'- -GGGCCUCUGCUGuacGUCCa-G-GUCCU- -5'
5748 3' -57.1 NC_001806.1 + 22302 0.76 0.374633
Target:  5'- cCCCGGGGACGugGcGCuGGaCCAGGc -3'
miRNA:   3'- -GGGCCUCUGCugUaCGuCCaGGUCCu -5'
5748 3' -57.1 NC_001806.1 + 24987 0.66 0.87896
Target:  5'- --gGGGGACGGgGUGCuguaacGGG-CCGGGAc -3'
miRNA:   3'- gggCCUCUGCUgUACG------UCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 28378 0.67 0.825149
Target:  5'- aCCGGGGGCGcCAUGUuaggGGGUgC-GGAa -3'
miRNA:   3'- gGGCCUCUGCuGUACG----UCCAgGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 30639 0.68 0.808147
Target:  5'- gCCGGGGgggcGCGGCcaggGUGGGcCCGGGAc -3'
miRNA:   3'- gGGCCUC----UGCUGua--CGUCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 34285 0.68 0.781509
Target:  5'- uCCCGGGGGCGGgAUG-GGGUUUAGcGGc -3'
miRNA:   3'- -GGGCCUCUGCUgUACgUCCAGGUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.