miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5752 5' -54 NC_001806.1 + 77662 0.66 0.956393
Target:  5'- cGGCGCGCUgcugaugugucCCGAgGCGGCa------- -3'
miRNA:   3'- -CCGCGCGA-----------GGUUgUGCCGcaucauuu -5'
5752 5' -54 NC_001806.1 + 76312 0.66 0.952394
Target:  5'- cGGUGCGCaaCGACcCGGCGgcGg--- -3'
miRNA:   3'- -CCGCGCGagGUUGuGCCGCauCauuu -5'
5752 5' -54 NC_001806.1 + 35560 0.66 0.948155
Target:  5'- cGGCGCGC-CCGGCGCcGCGc------ -3'
miRNA:   3'- -CCGCGCGaGGUUGUGcCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 101069 0.66 0.943675
Target:  5'- aGGaCGCGCUCCAgcugcACGCaGGCGa------ -3'
miRNA:   3'- -CC-GCGCGAGGU-----UGUG-CCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 3727 0.66 0.943675
Target:  5'- gGGCGCGUa--GGCGCGGCGcAGg--- -3'
miRNA:   3'- -CCGCGCGaggUUGUGCCGCaUCauuu -5'
5752 5' -54 NC_001806.1 + 147647 0.66 0.943675
Target:  5'- cGGCGCGCgUCCG-CGgGGCGg------ -3'
miRNA:   3'- -CCGCGCG-AGGUuGUgCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 136372 0.66 0.938948
Target:  5'- cGGCGCGCUCC---GCGGCcuccgcgaccGUGGc--- -3'
miRNA:   3'- -CCGCGCGAGGuugUGCCG----------CAUCauuu -5'
5752 5' -54 NC_001806.1 + 22544 0.66 0.938948
Target:  5'- uGGCGCGCgagAACGCGGCGc------ -3'
miRNA:   3'- -CCGCGCGaggUUGUGCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 116156 0.66 0.938462
Target:  5'- cGGCgGCGCUgCAGCGCugcgaagGGCGggUGGUAu- -3'
miRNA:   3'- -CCG-CGCGAgGUUGUG-------CCGC--AUCAUuu -5'
5752 5' -54 NC_001806.1 + 98605 0.67 0.935493
Target:  5'- gGGCGCGCggUCGgcaagguggugauggGCaucguggGCGGCGUGGUAu- -3'
miRNA:   3'- -CCGCGCGa-GGU---------------UG-------UGCCGCAUCAUuu -5'
5752 5' -54 NC_001806.1 + 21309 0.67 0.933975
Target:  5'- cGGCGgGCaCCGACGcCGGCGaGGa--- -3'
miRNA:   3'- -CCGCgCGaGGUUGU-GCCGCaUCauuu -5'
5752 5' -54 NC_001806.1 + 141676 0.67 0.923281
Target:  5'- cGUGCGC-CUGGC-CGGgGUGGUGAu -3'
miRNA:   3'- cCGCGCGaGGUUGuGCCgCAUCAUUu -5'
5752 5' -54 NC_001806.1 + 134792 0.67 0.923281
Target:  5'- aGGCGCGacgUCGACGCGcGCGaugcUGGUGGc -3'
miRNA:   3'- -CCGCGCga-GGUUGUGC-CGC----AUCAUUu -5'
5752 5' -54 NC_001806.1 + 135406 0.67 0.92272
Target:  5'- aGGCgcgacagGCGCUCCAGgucCugGGCGUAc---- -3'
miRNA:   3'- -CCG-------CGCGAGGUU---GugCCGCAUcauuu -5'
5752 5' -54 NC_001806.1 + 2818 0.67 0.91756
Target:  5'- gGGCGgGCUCgGGCcccgGgGGCGUGGa--- -3'
miRNA:   3'- -CCGCgCGAGgUUG----UgCCGCAUCauuu -5'
5752 5' -54 NC_001806.1 + 137755 0.67 0.91756
Target:  5'- gGGCGUcacCUCCu-CACGGcCGUGGUGu- -3'
miRNA:   3'- -CCGCGc--GAGGuuGUGCC-GCAUCAUuu -5'
5752 5' -54 NC_001806.1 + 97494 0.67 0.911591
Target:  5'- uGCuGCGCUCCGAgUACGGCGg------ -3'
miRNA:   3'- cCG-CGCGAGGUU-GUGCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 128554 0.67 0.911591
Target:  5'- cGGCcCGCgUCCAggGCGCGGuCGUAGcgGGAg -3'
miRNA:   3'- -CCGcGCG-AGGU--UGUGCC-GCAUCa-UUU- -5'
5752 5' -54 NC_001806.1 + 25923 0.67 0.905375
Target:  5'- cGGCGUGCgcgcGCGCGGCGggcGUGGGg -3'
miRNA:   3'- -CCGCGCGagguUGUGCCGCau-CAUUU- -5'
5752 5' -54 NC_001806.1 + 131265 0.68 0.892213
Target:  5'- cGCGCGCUUCAagcuACGCGugcccGCGUGGg--- -3'
miRNA:   3'- cCGCGCGAGGU----UGUGC-----CGCAUCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.