Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5755 | 5' | -51.2 | NC_001806.1 | + | 11718 | 0.66 | 0.995156 |
Target: 5'- aCCCCGGGA---GGUuguGGUUUUggaUCUCCc -3' miRNA: 3'- -GGGGCUCUuauUCGu--CCAGAA---GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 58980 | 0.66 | 0.99018 |
Target: 5'- gCCCUGcAGGAccaccuGGCAGGgcgCccccUCCUCCg -3' miRNA: 3'- -GGGGC-UCUUau----UCGUCCa--Ga---AGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 101300 | 0.66 | 0.99018 |
Target: 5'- gCCCUGuc---GGGCAGGggcUCCUCCa -3' miRNA: 3'- -GGGGCucuuaUUCGUCCagaAGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 149889 | 0.66 | 0.99018 |
Target: 5'- uCCCUGGGGgucgcaacGUAGGCGGGgCUUCUg-- -3' miRNA: 3'- -GGGGCUCU--------UAUUCGUCCaGAAGGagg -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 55334 | 0.66 | 0.99018 |
Target: 5'- cCCCCGGGug-GGGCGGugauguucGUCaggaCCUCCu -3' miRNA: 3'- -GGGGCUCuuaUUCGUC--------CAGaa--GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 86741 | 0.66 | 0.99018 |
Target: 5'- gCCCGGGGGcgcGCAuGUCggccgCCUCCg -3' miRNA: 3'- gGGGCUCUUauuCGUcCAGaa---GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 70073 | 0.66 | 0.991407 |
Target: 5'- gCCCGGGAcuuUGGGCuGGgCUaUCUCCc -3' miRNA: 3'- gGGGCUCUu--AUUCGuCCaGAaGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 142430 | 0.66 | 0.992191 |
Target: 5'- uUCCUGGGuGUuGGCAGGaaacgcgggguaacUCaagUCCUCCa -3' miRNA: 3'- -GGGGCUCuUAuUCGUCC--------------AGa--AGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 85982 | 0.66 | 0.992509 |
Target: 5'- cUCCCGGGGGgucGGCAGG-CgacggcgUCUCCc -3' miRNA: 3'- -GGGGCUCUUau-UCGUCCaGaa-----GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 57980 | 0.66 | 0.995082 |
Target: 5'- gCCCGGGc---AGCgccaucgAGGUCUUCCggaucgCCg -3' miRNA: 3'- gGGGCUCuuauUCG-------UCCAGAAGGa-----GG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 54961 | 0.66 | 0.994699 |
Target: 5'- gCCCGGGuuaaacaccuGguGGUCgUCCUCg -3' miRNA: 3'- gGGGCUCuuauu-----CguCCAGaAGGAGg -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 21173 | 0.66 | 0.994375 |
Target: 5'- aCCCCGAGcccagaccgcGAcGAGCGGGgggcCCUCg -3' miRNA: 3'- -GGGGCUC----------UUaUUCGUCCagaaGGAGg -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 68944 | 0.66 | 0.993496 |
Target: 5'- cCCCCGAGcgggGGGCuguGGUCccgCCgCCc -3' miRNA: 3'- -GGGGCUCuua-UUCGu--CCAGaa-GGaGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 81481 | 0.66 | 0.993496 |
Target: 5'- gCCCUGGGggUGcGGguGGUUguuaUCCa -3' miRNA: 3'- -GGGGCUCuuAU-UCguCCAGaaggAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 110326 | 0.66 | 0.992509 |
Target: 5'- aCCCCGGGcGUGuucccgacacGGCcuacuGGGUUUUCCguuUCCu -3' miRNA: 3'- -GGGGCUCuUAU----------UCG-----UCCAGAAGG---AGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 67148 | 0.67 | 0.98882 |
Target: 5'- gCCCCGAccccaGGGC-GGUCg-CCUCCa -3' miRNA: 3'- -GGGGCUcuua-UUCGuCCAGaaGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 99199 | 0.67 | 0.987318 |
Target: 5'- cCCCCGGGuGUccGCGGccugUUUCCUCUu -3' miRNA: 3'- -GGGGCUCuUAuuCGUCca--GAAGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 30287 | 0.67 | 0.987318 |
Target: 5'- cCCCCGGGGcgGAGCcGGcCgcccgCC-CCg -3' miRNA: 3'- -GGGGCUCUuaUUCGuCCaGaa---GGaGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 9791 | 0.67 | 0.985666 |
Target: 5'- gCCCCGAcgugcGggUGGGUGGGcUCggCCaaaUCCg -3' miRNA: 3'- -GGGGCU-----CuuAUUCGUCC-AGaaGG---AGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 6964 | 0.67 | 0.981872 |
Target: 5'- aCCCGAGucucUGGGCggaGGGUgUUCCcCCc -3' miRNA: 3'- gGGGCUCuu--AUUCG---UCCAgAAGGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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