Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5755 | 5' | -51.2 | NC_001806.1 | + | 3919 | 0.73 | 0.852495 |
Target: 5'- gCCCGAGAuccggAAGCAGGcCUggUCCagcgCCa -3' miRNA: 3'- gGGGCUCUua---UUCGUCCaGA--AGGa---GG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 3956 | 0.7 | 0.929147 |
Target: 5'- uCCCCGGGGAccacgcGCGGGuUCUggagccaccccaggCCUCCg -3' miRNA: 3'- -GGGGCUCUUauu---CGUCC-AGAa-------------GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 6087 | 0.72 | 0.882883 |
Target: 5'- gCCCGGGcggcgggGGGCGGGUCU--CUCCg -3' miRNA: 3'- gGGGCUCuua----UUCGUCCAGAagGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 6964 | 0.67 | 0.981872 |
Target: 5'- aCCCGAGucucUGGGCggaGGGUgUUCCcCCc -3' miRNA: 3'- gGGGCUCuu--AUUCG---UCCAgAAGGaGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 9383 | 0.69 | 0.965985 |
Target: 5'- gCCUGGGAGUAacGGCgaucGGGcCUUCCggaUCCa -3' miRNA: 3'- gGGGCUCUUAU--UCG----UCCaGAAGG---AGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 9791 | 0.67 | 0.985666 |
Target: 5'- gCCCCGAcgugcGggUGGGUGGGcUCggCCaaaUCCg -3' miRNA: 3'- -GGGGCU-----CuuAUUCGUCC-AGaaGG---AGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 11718 | 0.66 | 0.995156 |
Target: 5'- aCCCCGGGA---GGUuguGGUUUUggaUCUCCc -3' miRNA: 3'- -GGGGCUCUuauUCGu--CCAGAA---GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 12299 | 1.15 | 0.00376 |
Target: 5'- uCCCCGAGAAUAAGCAGGUCUUCCUCCa -3' miRNA: 3'- -GGGGCUCUUAUUCGUCCAGAAGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 16936 | 0.71 | 0.91562 |
Target: 5'- aCCCGGGAcgGcuuugucuccGGCGGGacggcuccucCUUCCUCCu -3' miRNA: 3'- gGGGCUCUuaU----------UCGUCCa---------GAAGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 17178 | 0.75 | 0.723375 |
Target: 5'- cCCCCGGGAA--GGCGGGUCUguggaCCguagggCCc -3' miRNA: 3'- -GGGGCUCUUauUCGUCCAGAa----GGa-----GG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 19927 | 0.81 | 0.430577 |
Target: 5'- cCCCUGuguuucguggguGGggUGGGCGGGUCUUCCcCCc -3' miRNA: 3'- -GGGGC------------UCuuAUUCGUCCAGAAGGaGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 20722 | 0.69 | 0.962601 |
Target: 5'- cCCgCCGGGG--GGGCGGGgggccggCggCCUCCg -3' miRNA: 3'- -GG-GGCUCUuaUUCGUCCa------GaaGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 21173 | 0.66 | 0.994375 |
Target: 5'- aCCCCGAGcccagaccgcGAcGAGCGGGgggcCCUCg -3' miRNA: 3'- -GGGGCUC----------UUaUUCGUCCagaaGGAGg -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 26709 | 0.7 | 0.942178 |
Target: 5'- gCCCGGGG---GGCGGGgCUgaccCCUCCc -3' miRNA: 3'- gGGGCUCUuauUCGUCCaGAa---GGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 27130 | 0.71 | 0.920861 |
Target: 5'- aCCCGAGGc--GGCcuGGGUCUUCCgcggagcUCCc -3' miRNA: 3'- gGGGCUCUuauUCG--UCCAGAAGG-------AGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 27845 | 0.71 | 0.921431 |
Target: 5'- uCCCCGGGGAcgGGGCcgccccgcgguGGGcCUgCCUCCc -3' miRNA: 3'- -GGGGCUCUUa-UUCG-----------UCCaGAaGGAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 30287 | 0.67 | 0.987318 |
Target: 5'- cCCCCGGGGcgGAGCcGGcCgcccgCC-CCg -3' miRNA: 3'- -GGGGCUCUuaUUCGuCCaGaa---GGaGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 37092 | 0.69 | 0.951066 |
Target: 5'- gCCCCGGGGA--GGUAGaaaugcaUCUUCuCUCCg -3' miRNA: 3'- -GGGGCUCUUauUCGUCc------AGAAG-GAGG- -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 54961 | 0.66 | 0.994699 |
Target: 5'- gCCCGGGuuaaacaccuGguGGUCgUCCUCg -3' miRNA: 3'- gGGGCUCuuauu-----CguCCAGaAGGAGg -5' |
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5755 | 5' | -51.2 | NC_001806.1 | + | 55334 | 0.66 | 0.99018 |
Target: 5'- cCCCCGGGug-GGGCGGugauguucGUCaggaCCUCCu -3' miRNA: 3'- -GGGGCUCuuaUUCGUC--------CAGaa--GGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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