miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5755 5' -51.2 NC_001806.1 + 12299 1.15 0.00376
Target:  5'- uCCCCGAGAAUAAGCAGGUCUUCCUCCa -3'
miRNA:   3'- -GGGGCUCUUAUUCGUCCAGAAGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 19927 0.81 0.430577
Target:  5'- cCCCUGuguuucguggguGGggUGGGCGGGUCUUCCcCCc -3'
miRNA:   3'- -GGGGC------------UCuuAUUCGUCCAGAAGGaGG- -5'
5755 5' -51.2 NC_001806.1 + 17178 0.75 0.723375
Target:  5'- cCCCCGGGAA--GGCGGGUCUguggaCCguagggCCc -3'
miRNA:   3'- -GGGGCUCUUauUCGUCCAGAa----GGa-----GG- -5'
5755 5' -51.2 NC_001806.1 + 60590 0.74 0.809883
Target:  5'- uCCCCGGGAcguuaccggGGGCcaccccggccccAGGUCgUCCUCCu -3'
miRNA:   3'- -GGGGCUCUua-------UUCG------------UCCAGaAGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 56699 0.73 0.818777
Target:  5'- gCCCGGGAAccc-CGGGUCgcucugggUCCUCCg -3'
miRNA:   3'- gGGGCUCUUauucGUCCAGa-------AGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 3919 0.73 0.852495
Target:  5'- gCCCGAGAuccggAAGCAGGcCUggUCCagcgCCa -3'
miRNA:   3'- gGGGCUCUua---UUCGUCCaGA--AGGa---GG- -5'
5755 5' -51.2 NC_001806.1 + 130502 0.72 0.865842
Target:  5'- gCCgCCGAGAcggaggAGGUGGGUCUUuucgucgaaaaauaCCUCCg -3'
miRNA:   3'- -GG-GGCUCUua----UUCGUCCAGAA--------------GGAGG- -5'
5755 5' -51.2 NC_001806.1 + 6087 0.72 0.882883
Target:  5'- gCCCGGGcggcgggGGGCGGGUCU--CUCCg -3'
miRNA:   3'- gGGGCUCuua----UUCGUCCAGAagGAGG- -5'
5755 5' -51.2 NC_001806.1 + 147012 0.71 0.900663
Target:  5'- cCCCCGAG-AUGGGCAGGUagcgcgugaggCCgCCc -3'
miRNA:   3'- -GGGGCUCuUAUUCGUCCAgaa--------GGaGG- -5'
5755 5' -51.2 NC_001806.1 + 146928 0.71 0.90956
Target:  5'- uCCCCGucuccauguccAGGAUGGGCAGGcagUCCcCCg -3'
miRNA:   3'- -GGGGC-----------UCUUAUUCGUCCagaAGGaGG- -5'
5755 5' -51.2 NC_001806.1 + 16936 0.71 0.91562
Target:  5'- aCCCGGGAcgGcuuugucuccGGCGGGacggcuccucCUUCCUCCu -3'
miRNA:   3'- gGGGCUCUuaU----------UCGUCCa---------GAAGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 150710 0.71 0.920861
Target:  5'- cCCCCGAGGcgGcccgcccugugagGGCGGG-CUggCUCCa -3'
miRNA:   3'- -GGGGCUCUuaU-------------UCGUCCaGAagGAGG- -5'
5755 5' -51.2 NC_001806.1 + 27130 0.71 0.920861
Target:  5'- aCCCGAGGc--GGCcuGGGUCUUCCgcggagcUCCc -3'
miRNA:   3'- gGGGCUCUuauUCG--UCCAGAAGG-------AGG- -5'
5755 5' -51.2 NC_001806.1 + 27845 0.71 0.921431
Target:  5'- uCCCCGGGGAcgGGGCcgccccgcgguGGGcCUgCCUCCc -3'
miRNA:   3'- -GGGGCUCUUa-UUCG-----------UCCaGAaGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 132697 0.7 0.926992
Target:  5'- gCCCGcGGuggGGGCcaGGGUCgUCCUCCc -3'
miRNA:   3'- gGGGCuCUua-UUCG--UCCAGaAGGAGG- -5'
5755 5' -51.2 NC_001806.1 + 3956 0.7 0.929147
Target:  5'- uCCCCGGGGAccacgcGCGGGuUCUggagccaccccaggCCUCCg -3'
miRNA:   3'- -GGGGCUCUUauu---CGUCC-AGAa-------------GGAGG- -5'
5755 5' -51.2 NC_001806.1 + 26709 0.7 0.942178
Target:  5'- gCCCGGGG---GGCGGGgCUgaccCCUCCc -3'
miRNA:   3'- gGGGCUCUuauUCGUCCaGAa---GGAGG- -5'
5755 5' -51.2 NC_001806.1 + 95582 0.7 0.942178
Target:  5'- gCUCGAGAAgaugcuGCGGGUCagCgUCCa -3'
miRNA:   3'- gGGGCUCUUauu---CGUCCAGaaGgAGG- -5'
5755 5' -51.2 NC_001806.1 + 72543 0.69 0.951066
Target:  5'- cCCCCGGGAggGGGUAGGgggcCCggggCCa -3'
miRNA:   3'- -GGGGCUCUuaUUCGUCCagaaGGa---GG- -5'
5755 5' -51.2 NC_001806.1 + 37092 0.69 0.951066
Target:  5'- gCCCCGGGGA--GGUAGaaaugcaUCUUCuCUCCg -3'
miRNA:   3'- -GGGGCUCUUauUCGUCc------AGAAG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.