miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 3' -52.4 NC_001806.1 + 77372 0.71 0.869561
Target:  5'- gCCaCAGGcCAGACGGGCgcgGGCGc--GGc -3'
miRNA:   3'- -GG-GUCCuGUUUGUCCGa--CCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 101833 0.7 0.889044
Target:  5'- uUCCAGGGCGGugAGGCgcaccagcgccgccUGGCGg---- -3'
miRNA:   3'- -GGGUCCUGUUugUCCG--------------ACCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 62770 0.7 0.891106
Target:  5'- uCCCGGGuCAccuugcugAACAGGUUGGUGaacagGGg -3'
miRNA:   3'- -GGGUCCuGU--------UUGUCCGACCGCaaa--CC- -5'
5756 3' -52.4 NC_001806.1 + 88450 0.7 0.897822
Target:  5'- gUCCAGGAUGAAcCGGGUggUGGCGUc--- -3'
miRNA:   3'- -GGGUCCUGUUU-GUCCG--ACCGCAaacc -5'
5756 3' -52.4 NC_001806.1 + 118232 0.7 0.909922
Target:  5'- uUgAGGAUauaacaaGAACAGGCcgUGGCGUUUGu -3'
miRNA:   3'- gGgUCCUG-------UUUGUCCG--ACCGCAAACc -5'
5756 3' -52.4 NC_001806.1 + 64979 0.7 0.910535
Target:  5'- uCCCGGGGCAAACauccagGGGCgcGGUGUcaUUGc -3'
miRNA:   3'- -GGGUCCUGUUUG------UCCGa-CCGCA--AACc -5'
5756 3' -52.4 NC_001806.1 + 103146 0.7 0.910535
Target:  5'- cUCCAGGGCAGcgGCAGccGCUGuGCGc-UGGg -3'
miRNA:   3'- -GGGUCCUGUU--UGUC--CGAC-CGCaaACC- -5'
5756 3' -52.4 NC_001806.1 + 32635 0.69 0.916525
Target:  5'- --gGGGAaaaGAACGGGCUGGUGUg--- -3'
miRNA:   3'- gggUCCUg--UUUGUCCGACCGCAaacc -5'
5756 3' -52.4 NC_001806.1 + 17925 0.69 0.92227
Target:  5'- gCCCGGGACAAACGgacGGgaGcGCGaUUGu -3'
miRNA:   3'- -GGGUCCUGUUUGU---CCgaC-CGCaAACc -5'
5756 3' -52.4 NC_001806.1 + 100287 0.69 0.92227
Target:  5'- gCCGGGAaacCAAACGcggaaugcGGCUGGgGUUgGGg -3'
miRNA:   3'- gGGUCCU---GUUUGU--------CCGACCgCAAaCC- -5'
5756 3' -52.4 NC_001806.1 + 4825 0.69 0.932502
Target:  5'- gUCCGGGGCGGcgaggccGCGGGgucgGGCGUcgGGa -3'
miRNA:   3'- -GGGUCCUGUU-------UGUCCga--CCGCAaaCC- -5'
5756 3' -52.4 NC_001806.1 + 81949 0.69 0.938018
Target:  5'- uCCCGGGACcgcCGGGUUcGGCGgcgacgGGu -3'
miRNA:   3'- -GGGUCCUGuuuGUCCGA-CCGCaaa---CC- -5'
5756 3' -52.4 NC_001806.1 + 146538 0.69 0.938018
Target:  5'- cCCCGacACGGAUuGGCUGGUGUagUGGg -3'
miRNA:   3'- -GGGUccUGUUUGuCCGACCGCAa-ACC- -5'
5756 3' -52.4 NC_001806.1 + 41718 0.69 0.938018
Target:  5'- cCCCGGGACuGGCGGGCgcaaacgcgGGCcacccgcgGGg -3'
miRNA:   3'- -GGGUCCUGuUUGUCCGa--------CCGcaaa----CC- -5'
5756 3' -52.4 NC_001806.1 + 15962 0.69 0.938018
Target:  5'- gCCAGGACucGgGGGCguUGGUGUcgaUGGu -3'
miRNA:   3'- gGGUCCUGuuUgUCCG--ACCGCAa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 57806 0.69 0.938018
Target:  5'- gUCCAGGGgGAcuggaucuGCGGGCgGGgGUgcggUGGg -3'
miRNA:   3'- -GGGUCCUgUU--------UGUCCGaCCgCAa---ACC- -5'
5756 3' -52.4 NC_001806.1 + 13136 0.68 0.942775
Target:  5'- gCCUgggGGGAgAGGCAGGCUGaCGgg-GGg -3'
miRNA:   3'- -GGG---UCCUgUUUGUCCGACcGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 42650 0.68 0.947287
Target:  5'- gUCCGGuGCGG--GGGCUGGCGUUguugaUGGc -3'
miRNA:   3'- -GGGUCcUGUUugUCCGACCGCAA-----ACC- -5'
5756 3' -52.4 NC_001806.1 + 147788 0.68 0.947287
Target:  5'- gCCCGGGGCGgggGGCGGaGCcUGGCa--UGGg -3'
miRNA:   3'- -GGGUCCUGU---UUGUC-CG-ACCGcaaACC- -5'
5756 3' -52.4 NC_001806.1 + 135400 0.68 0.954006
Target:  5'- uCCCAGaGGCGcGACAGGCgcuccagguccugGGCGUacgaagGGa -3'
miRNA:   3'- -GGGUC-CUGU-UUGUCCGa------------CCGCAaa----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.