miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5765 5' -49.2 NC_001806.1 + 72339 0.66 0.998853
Target:  5'- aCGGugGGCGggaGCCAUgGugUUUuUCGu -3'
miRNA:   3'- cGCCugCCGC---CGGUAaUugAAAuAGU- -5'
5765 5' -49.2 NC_001806.1 + 151580 0.66 0.998853
Target:  5'- gGCGGcgGCGGCGGgCCAUggaGACa------ -3'
miRNA:   3'- -CGCC--UGCCGCC-GGUAa--UUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 83348 0.66 0.998853
Target:  5'- cCGGgcccuuuuccGCGGCGGCCAUcGACaccuUCGc -3'
miRNA:   3'- cGCC----------UGCCGCCGGUAaUUGaaauAGU- -5'
5765 5' -49.2 NC_001806.1 + 112429 0.66 0.998607
Target:  5'- cGCGGGCGGCcGGUCGacgggguGCUc-GUCAc -3'
miRNA:   3'- -CGCCUGCCG-CCGGUaau----UGAaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 56653 0.66 0.998607
Target:  5'- uCGGcCGGCGGCCcgUGGg---AUCGu -3'
miRNA:   3'- cGCCuGCCGCCGGuaAUUgaaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 46463 0.66 0.998607
Target:  5'- cCGGAUGGCGGCgGUccAGCUcugggacaUGUCGc -3'
miRNA:   3'- cGCCUGCCGCCGgUAa-UUGAa-------AUAGU- -5'
5765 5' -49.2 NC_001806.1 + 100392 0.66 0.998607
Target:  5'- gGCGGcGCGGgGGCCGggguGCccgaUGUCGg -3'
miRNA:   3'- -CGCC-UGCCgCCGGUaau-UGaa--AUAGU- -5'
5765 5' -49.2 NC_001806.1 + 126130 0.66 0.998525
Target:  5'- cGCGGAcgaCGGCGGCgAggccgGcgccgacacgcggcGCUUUAUCu -3'
miRNA:   3'- -CGCCU---GCCGCCGgUaa---U--------------UGAAAUAGu -5'
5765 5' -49.2 NC_001806.1 + 21923 0.66 0.998317
Target:  5'- cGCGcGGCGGUGGCCGgccGCg------ -3'
miRNA:   3'- -CGC-CUGCCGCCGGUaauUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 121022 0.66 0.997978
Target:  5'- gGCGGACGaGCGGCuCAagauCUUucggUGUCu -3'
miRNA:   3'- -CGCCUGC-CGCCG-GUaauuGAA----AUAGu -5'
5765 5' -49.2 NC_001806.1 + 77389 0.66 0.997978
Target:  5'- cGCGGgcGCGGCGGCCGc----------- -3'
miRNA:   3'- -CGCC--UGCCGCCGGUaauugaaauagu -5'
5765 5' -49.2 NC_001806.1 + 136987 0.66 0.997978
Target:  5'- uGCGGucaugGCGGCGGCCGgcggggAGCg------ -3'
miRNA:   3'- -CGCC-----UGCCGCCGGUaa----UUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 132186 0.67 0.997127
Target:  5'- cGUGGGCgcgccuGGCGGCCAUUcGCg------ -3'
miRNA:   3'- -CGCCUG------CCGCCGGUAAuUGaaauagu -5'
5765 5' -49.2 NC_001806.1 + 98637 0.67 0.997127
Target:  5'- cGUGGGCGGCGuGgUAUcGGCcgUGUCGg -3'
miRNA:   3'- -CGCCUGCCGC-CgGUAaUUGaaAUAGU- -5'
5765 5' -49.2 NC_001806.1 + 3181 0.67 0.997127
Target:  5'- gGCGGccACGGCGGCCuc--GCUg----- -3'
miRNA:   3'- -CGCC--UGCCGCCGGuaauUGAaauagu -5'
5765 5' -49.2 NC_001806.1 + 125794 0.67 0.995998
Target:  5'- gGCGGGuaUGGUGGaCCGcgGACUcgGUCGg -3'
miRNA:   3'- -CGCCU--GCCGCC-GGUaaUUGAaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 39188 0.67 0.995998
Target:  5'- -gGGGCGGCGGCC-UUGuCUgcguUCu -3'
miRNA:   3'- cgCCUGCCGCCGGuAAUuGAaau-AGu -5'
5765 5' -49.2 NC_001806.1 + 119487 0.67 0.99531
Target:  5'- cCGGGCGuGCGGCCugUGGCguugcAUCGg -3'
miRNA:   3'- cGCCUGC-CGCCGGuaAUUGaaa--UAGU- -5'
5765 5' -49.2 NC_001806.1 + 144529 0.67 0.99531
Target:  5'- aGCGGGgGcGCGGCCGU--GCcg-AUCGc -3'
miRNA:   3'- -CGCCUgC-CGCCGGUAauUGaaaUAGU- -5'
5765 5' -49.2 NC_001806.1 + 65736 0.67 0.99531
Target:  5'- gGCuGGGCGGCuGGCCAUUucAACa------ -3'
miRNA:   3'- -CG-CCUGCCG-CCGGUAA--UUGaaauagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.