miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 3' -60.2 NC_001806.1 + 10406 0.68 0.601475
Target:  5'- gCGGGagcCGGGgg-GUCCCgCUGGCGGGa -3'
miRNA:   3'- gGCCC---GUUCauaCGGGGgGACCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 144812 0.68 0.591593
Target:  5'- cCCGGGaCGAGgg-GCCCCCgaccgcGGCGGu -3'
miRNA:   3'- -GGCCC-GUUCauaCGGGGGga----CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 108719 0.67 0.651064
Target:  5'- cUCGGGgGAGaucacCCCCCCggggacGGCGAGa -3'
miRNA:   3'- -GGCCCgUUCauac-GGGGGGa-----CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 66830 0.67 0.670852
Target:  5'- cCCGGGUGgccGGUGUGCgccgCCUCCUGGggccCGGGc -3'
miRNA:   3'- -GGCCCGU---UCAUACG----GGGGGACC----GCUC- -5'
5766 3' -60.2 NC_001806.1 + 99775 0.67 0.681689
Target:  5'- gCCGGGUggGUcguuguugguuccgGUCCCCCaccugagGGCGAu -3'
miRNA:   3'- -GGCCCGuuCAua------------CGGGGGGa------CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 99680 0.67 0.688562
Target:  5'- aCGGGgGAGUGggggcaugggacGCCggaCCCUGGgGAGg -3'
miRNA:   3'- gGCCCgUUCAUa-----------CGGg--GGGACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 73964 0.67 0.690521
Target:  5'- gCCGGGCcccucggcGUaAUGCCCgCCCcGGcCGGGg -3'
miRNA:   3'- -GGCCCGuu------CA-UACGGG-GGGaCC-GCUC- -5'
5766 3' -60.2 NC_001806.1 + 121673 0.67 0.690521
Target:  5'- gUGGGcCAAGaugGCCCaguguaCCCUGGCGGu -3'
miRNA:   3'- gGCCC-GUUCauaCGGG------GGGACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 88286 0.67 0.700291
Target:  5'- gCC-GGUAGGUcgcucAUGCCCCCCucgaUGGCcAGg -3'
miRNA:   3'- -GGcCCGUUCA-----UACGGGGGG----ACCGcUC- -5'
5766 3' -60.2 NC_001806.1 + 24908 0.66 0.738749
Target:  5'- gCGGGCuuGGccacGCCCCCgC-GGCGGGa -3'
miRNA:   3'- gGCCCGu-UCaua-CGGGGG-GaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 31327 0.66 0.738749
Target:  5'- cCCGGGaCGAGggaaaacaauaagggAcGCCCCCCguguuugUGGgGAGg -3'
miRNA:   3'- -GGCCC-GUUCa--------------UaCGGGGGG-------ACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 32645 0.66 0.738749
Target:  5'- aCGGGCuGGUGUgcuguaacacgaGCCCaCCCgcgagUGGCGuGg -3'
miRNA:   3'- gGCCCGuUCAUA------------CGGG-GGG-----ACCGCuC- -5'
5766 3' -60.2 NC_001806.1 + 27864 0.66 0.719661
Target:  5'- cCCGcGGUggGccUGCCuCCCCUGG-GAc -3'
miRNA:   3'- -GGC-CCGuuCauACGG-GGGGACCgCUc -5'
5766 3' -60.2 NC_001806.1 + 26928 0.66 0.747229
Target:  5'- uCCGGGUGcgccaccuGGUGUcugggccucggccGCCCgCCUGGCGc- -3'
miRNA:   3'- -GGCCCGU--------UCAUA-------------CGGGgGGACCGCuc -5'
5766 3' -60.2 NC_001806.1 + 135867 0.66 0.748167
Target:  5'- gCCgGGGCGucuaucagGUGCCCCCC-GGCcucgucGAGg -3'
miRNA:   3'- -GG-CCCGUuca-----UACGGGGGGaCCG------CUC- -5'
5766 3' -60.2 NC_001806.1 + 17159 0.66 0.738749
Target:  5'- gCCGGucgcucCAAGg--GCCCCCCcgggaaGGCGGGu -3'
miRNA:   3'- -GGCCc-----GUUCauaCGGGGGGa-----CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 127749 0.66 0.729245
Target:  5'- cCCGGGCGGGc-UGCCgggugcgggCCUgUGGCGGc -3'
miRNA:   3'- -GGCCCGUUCauACGG---------GGGgACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 100104 0.66 0.729245
Target:  5'- cCCGcGGCcGGcugaccGCCCgCCUGGCGGu -3'
miRNA:   3'- -GGC-CCGuUCaua---CGGGgGGACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 30423 0.66 0.719661
Target:  5'- gCCGGGCGuggagGGUGggcacggGCCCUCCcgcGGCGc- -3'
miRNA:   3'- -GGCCCGU-----UCAUa------CGGGGGGa--CCGCuc -5'
5766 3' -60.2 NC_001806.1 + 22119 0.66 0.719661
Target:  5'- cCCGGGCcucuGGgggGCgCCCgaGGCGGa -3'
miRNA:   3'- -GGCCCGu---UCauaCGgGGGgaCCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.