Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5766 | 3' | -60.2 | NC_001806.1 | + | 30423 | 0.66 | 0.719661 |
Target: 5'- gCCGGGCGuggagGGUGggcacggGCCCUCCcgcGGCGc- -3' miRNA: 3'- -GGCCCGU-----UCAUa------CGGGGGGa--CCGCuc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 31327 | 0.66 | 0.738749 |
Target: 5'- cCCGGGaCGAGggaaaacaauaagggAcGCCCCCCguguuugUGGgGAGg -3' miRNA: 3'- -GGCCC-GUUCa--------------UaCGGGGGG-------ACCgCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 32645 | 0.66 | 0.738749 |
Target: 5'- aCGGGCuGGUGUgcuguaacacgaGCCCaCCCgcgagUGGCGuGg -3' miRNA: 3'- gGCCCGuUCAUA------------CGGG-GGG-----ACCGCuC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 38704 | 0.69 | 0.552408 |
Target: 5'- cCCGGGCGGGgcccccGCCCCaCCUccGGCa-- -3' miRNA: 3'- -GGCCCGUUCaua---CGGGG-GGA--CCGcuc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 45301 | 0.66 | 0.719661 |
Target: 5'- cCCGcGCGGGga-GCCgCCC-GGCGAGg -3' miRNA: 3'- -GGCcCGUUCauaCGGgGGGaCCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 50783 | 0.66 | 0.748167 |
Target: 5'- aCGGGgGAuucacgGCCCCCgaGGUGGGc -3' miRNA: 3'- gGCCCgUUcaua--CGGGGGgaCCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 55528 | 0.69 | 0.58174 |
Target: 5'- cCCGGGgGguuuAGUGgggcgGCCCgaCUUGGCGGGg -3' miRNA: 3'- -GGCCCgU----UCAUa----CGGGg-GGACCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 55886 | 0.66 | 0.719661 |
Target: 5'- cCCGGGCc---AUGCccgacgccuCCCCCUcGCGAGg -3' miRNA: 3'- -GGCCCGuucaUACG---------GGGGGAcCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 66830 | 0.67 | 0.670852 |
Target: 5'- cCCGGGUGgccGGUGUGCgccgCCUCCUGGggccCGGGc -3' miRNA: 3'- -GGCCCGU---UCAUACG----GGGGGACC----GCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 73964 | 0.67 | 0.690521 |
Target: 5'- gCCGGGCcccucggcGUaAUGCCCgCCCcGGcCGGGg -3' miRNA: 3'- -GGCCCGuu------CA-UACGGG-GGGaCC-GCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 76348 | 0.7 | 0.476802 |
Target: 5'- uCCGGGCAGGggucacccUGCCCUgCCcGaGCGAGg -3' miRNA: 3'- -GGCCCGUUCau------ACGGGG-GGaC-CGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 77451 | 0.66 | 0.729245 |
Target: 5'- cCCGGGC--GUccGCCCCaCCcGGCcaaGAGg -3' miRNA: 3'- -GGCCCGuuCAuaCGGGG-GGaCCG---CUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 78281 | 0.71 | 0.432229 |
Target: 5'- gCCGcGGCAAGU-UGUccgaaaccgaCCCCCUGGCGc- -3' miRNA: 3'- -GGC-CCGUUCAuACG----------GGGGGACCGCuc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 88286 | 0.67 | 0.700291 |
Target: 5'- gCC-GGUAGGUcgcucAUGCCCCCCucgaUGGCcAGg -3' miRNA: 3'- -GGcCCGUUCA-----UACGGGGGG----ACCGcUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 91402 | 0.66 | 0.75656 |
Target: 5'- cCCGGGUucgaGGGUcgGCCcaccgcgCCCCUcgucGGCGGa -3' miRNA: 3'- -GGCCCG----UUCAuaCGG-------GGGGA----CCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 99680 | 0.67 | 0.688562 |
Target: 5'- aCGGGgGAGUGggggcaugggacGCCggaCCCUGGgGAGg -3' miRNA: 3'- gGCCCgUUCAUa-----------CGGg--GGGACCgCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 99775 | 0.67 | 0.681689 |
Target: 5'- gCCGGGUggGUcguuguugguuccgGUCCCCCaccugagGGCGAu -3' miRNA: 3'- -GGCCCGuuCAua------------CGGGGGGa------CCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 100104 | 0.66 | 0.729245 |
Target: 5'- cCCGcGGCcGGcugaccGCCCgCCUGGCGGu -3' miRNA: 3'- -GGC-CCGuUCaua---CGGGgGGACCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 105229 | 0.69 | 0.562141 |
Target: 5'- uUCGGGCccccGAGUugcugGCCCCCaacGGCGAc -3' miRNA: 3'- -GGCCCG----UUCAua---CGGGGGga-CCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 108719 | 0.67 | 0.651064 |
Target: 5'- cUCGGGgGAGaucacCCCCCCggggacGGCGAGa -3' miRNA: 3'- -GGCCCgUUCauac-GGGGGGa-----CCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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