Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5766 | 3' | -60.2 | NC_001806.1 | + | 144573 | 0.68 | 0.615343 |
Target: 5'- uCCGGGCGcguccgGGUGccgcggcucuccggGCCCCCCUGcagcCGGGg -3' miRNA: 3'- -GGCCCGU------UCAUa-------------CGGGGGGACc---GCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 21289 | 0.68 | 0.641145 |
Target: 5'- gCGGGaCGGGaggGCCCCCgC-GGCGGGc -3' miRNA: 3'- gGCCC-GUUCauaCGGGGG-GaCCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 108719 | 0.67 | 0.651064 |
Target: 5'- cUCGGGgGAGaucacCCCCCCggggacGGCGAGa -3' miRNA: 3'- -GGCCCgUUCauac-GGGGGGa-----CCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 66830 | 0.67 | 0.670852 |
Target: 5'- cCCGGGUGgccGGUGUGCgccgCCUCCUGGggccCGGGc -3' miRNA: 3'- -GGCCCGU---UCAUACG----GGGGGACC----GCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 99775 | 0.67 | 0.681689 |
Target: 5'- gCCGGGUggGUcguuguugguuccgGUCCCCCaccugagGGCGAu -3' miRNA: 3'- -GGCCCGuuCAua------------CGGGGGGa------CCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 99680 | 0.67 | 0.688562 |
Target: 5'- aCGGGgGAGUGggggcaugggacGCCggaCCCUGGgGAGg -3' miRNA: 3'- gGCCCgUUCAUa-----------CGGg--GGGACCgCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 121673 | 0.67 | 0.690521 |
Target: 5'- gUGGGcCAAGaugGCCCaguguaCCCUGGCGGu -3' miRNA: 3'- gGCCC-GUUCauaCGGG------GGGACCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 73964 | 0.67 | 0.690521 |
Target: 5'- gCCGGGCcccucggcGUaAUGCCCgCCCcGGcCGGGg -3' miRNA: 3'- -GGCCCGuu------CA-UACGGG-GGGaCC-GCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 88286 | 0.67 | 0.700291 |
Target: 5'- gCC-GGUAGGUcgcucAUGCCCCCCucgaUGGCcAGg -3' miRNA: 3'- -GGcCCGUUCA-----UACGGGGGG----ACCGcUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 27864 | 0.66 | 0.719661 |
Target: 5'- cCCGcGGUggGccUGCCuCCCCUGG-GAc -3' miRNA: 3'- -GGC-CCGuuCauACGG-GGGGACCgCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 55886 | 0.66 | 0.719661 |
Target: 5'- cCCGGGCc---AUGCccgacgccuCCCCCUcGCGAGg -3' miRNA: 3'- -GGCCCGuucaUACG---------GGGGGAcCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 45301 | 0.66 | 0.719661 |
Target: 5'- cCCGcGCGGGga-GCCgCCC-GGCGAGg -3' miRNA: 3'- -GGCcCGUUCauaCGGgGGGaCCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 30423 | 0.66 | 0.719661 |
Target: 5'- gCCGGGCGuggagGGUGggcacggGCCCUCCcgcGGCGc- -3' miRNA: 3'- -GGCCCGU-----UCAUa------CGGGGGGa--CCGCuc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 22119 | 0.66 | 0.719661 |
Target: 5'- cCCGGGCcucuGGgggGCgCCCgaGGCGGa -3' miRNA: 3'- -GGCCCGu---UCauaCGgGGGgaCCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 29494 | 0.66 | 0.719661 |
Target: 5'- aCGGGCAaucagcGGUucGCCCcgcgguaccugaCCCUGGgGGGg -3' miRNA: 3'- gGCCCGU------UCAuaCGGG------------GGGACCgCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 100104 | 0.66 | 0.729245 |
Target: 5'- cCCGcGGCcGGcugaccGCCCgCCUGGCGGu -3' miRNA: 3'- -GGC-CCGuUCaua---CGGGgGGACCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 77451 | 0.66 | 0.729245 |
Target: 5'- cCCGGGC--GUccGCCCCaCCcGGCcaaGAGg -3' miRNA: 3'- -GGCCCGuuCAuaCGGGG-GGaCCG---CUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 127749 | 0.66 | 0.729245 |
Target: 5'- cCCGGGCGGGc-UGCCgggugcgggCCUgUGGCGGc -3' miRNA: 3'- -GGCCCGUUCauACGG---------GGGgACCGCUc -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 17159 | 0.66 | 0.738749 |
Target: 5'- gCCGGucgcucCAAGg--GCCCCCCcgggaaGGCGGGu -3' miRNA: 3'- -GGCCc-----GUUCauaCGGGGGGa-----CCGCUC- -5' |
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5766 | 3' | -60.2 | NC_001806.1 | + | 24908 | 0.66 | 0.738749 |
Target: 5'- gCGGGCuuGGccacGCCCCCgC-GGCGGGa -3' miRNA: 3'- gGCCCGu-UCaua-CGGGGG-GaCCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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