miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 3' -60.2 NC_001806.1 + 55886 0.66 0.719661
Target:  5'- cCCGGGCc---AUGCccgacgccuCCCCCUcGCGAGg -3'
miRNA:   3'- -GGCCCGuucaUACG---------GGGGGAcCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 29494 0.66 0.719661
Target:  5'- aCGGGCAaucagcGGUucGCCCcgcgguaccugaCCCUGGgGGGg -3'
miRNA:   3'- gGCCCGU------UCAuaCGGG------------GGGACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 88286 0.67 0.700291
Target:  5'- gCC-GGUAGGUcgcucAUGCCCCCCucgaUGGCcAGg -3'
miRNA:   3'- -GGcCCGUUCA-----UACGGGGGG----ACCGcUC- -5'
5766 3' -60.2 NC_001806.1 + 73964 0.67 0.690521
Target:  5'- gCCGGGCcccucggcGUaAUGCCCgCCCcGGcCGGGg -3'
miRNA:   3'- -GGCCCGuu------CA-UACGGG-GGGaCC-GCUC- -5'
5766 3' -60.2 NC_001806.1 + 121673 0.67 0.690521
Target:  5'- gUGGGcCAAGaugGCCCaguguaCCCUGGCGGu -3'
miRNA:   3'- gGCCC-GUUCauaCGGG------GGGACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 99680 0.67 0.688562
Target:  5'- aCGGGgGAGUGggggcaugggacGCCggaCCCUGGgGAGg -3'
miRNA:   3'- gGCCCgUUCAUa-----------CGGg--GGGACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 99775 0.67 0.681689
Target:  5'- gCCGGGUggGUcguuguugguuccgGUCCCCCaccugagGGCGAu -3'
miRNA:   3'- -GGCCCGuuCAua------------CGGGGGGa------CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 66830 0.67 0.670852
Target:  5'- cCCGGGUGgccGGUGUGCgccgCCUCCUGGggccCGGGc -3'
miRNA:   3'- -GGCCCGU---UCAUACG----GGGGGACC----GCUC- -5'
5766 3' -60.2 NC_001806.1 + 108719 0.67 0.651064
Target:  5'- cUCGGGgGAGaucacCCCCCCggggacGGCGAGa -3'
miRNA:   3'- -GGCCCgUUCauac-GGGGGGa-----CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 21289 0.68 0.641145
Target:  5'- gCGGGaCGGGaggGCCCCCgC-GGCGGGc -3'
miRNA:   3'- gGCCC-GUUCauaCGGGGG-GaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 144573 0.68 0.615343
Target:  5'- uCCGGGCGcguccgGGUGccgcggcucuccggGCCCCCCUGcagcCGGGg -3'
miRNA:   3'- -GGCCCGU------UCAUa-------------CGGGGGGACc---GCUC- -5'
5766 3' -60.2 NC_001806.1 + 10406 0.68 0.601475
Target:  5'- gCGGGagcCGGGgg-GUCCCgCUGGCGGGa -3'
miRNA:   3'- gGCCC---GUUCauaCGGGGgGACCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 144812 0.68 0.591593
Target:  5'- cCCGGGaCGAGgg-GCCCCCgaccgcGGCGGu -3'
miRNA:   3'- -GGCCC-GUUCauaCGGGGGga----CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 29142 0.68 0.591593
Target:  5'- cUCGGGgGGGa--GCCCCCCccGCGAGg -3'
miRNA:   3'- -GGCCCgUUCauaCGGGGGGacCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 55528 0.69 0.58174
Target:  5'- cCCGGGgGguuuAGUGgggcgGCCCgaCUUGGCGGGg -3'
miRNA:   3'- -GGCCCgU----UCAUa----CGGGg-GGACCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 105229 0.69 0.562141
Target:  5'- uUCGGGCccccGAGUugcugGCCCCCaacGGCGAc -3'
miRNA:   3'- -GGCCCG----UUCAua---CGGGGGga-CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 6973 0.69 0.552408
Target:  5'- uCUGGGCGgagGGUGUuCCCCCCcgUGGCucucGAGa -3'
miRNA:   3'- -GGCCCGU---UCAUAcGGGGGG--ACCG----CUC- -5'
5766 3' -60.2 NC_001806.1 + 38704 0.69 0.552408
Target:  5'- cCCGGGCGGGgcccccGCCCCaCCUccGGCa-- -3'
miRNA:   3'- -GGCCCGUUCaua---CGGGG-GGA--CCGcuc -5'
5766 3' -60.2 NC_001806.1 + 141388 0.69 0.552408
Target:  5'- uCUGGGCGuGUGUGCCCCagagcauaaacaCCaGGcCGGGg -3'
miRNA:   3'- -GGCCCGUuCAUACGGGG------------GGaCC-GCUC- -5'
5766 3' -60.2 NC_001806.1 + 5939 0.7 0.495262
Target:  5'- gCGGGCGGGaccGCCCCaagggGGCGGGg -3'
miRNA:   3'- gGCCCGUUCauaCGGGGgga--CCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.