miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 3' -60.2 NC_001806.1 + 7495 1.09 0.001237
Target:  5'- cCCGGGCAAGUAUGCCCCCCUGGCGAGc -3'
miRNA:   3'- -GGCCCGUUCAUACGGGGGGACCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 135524 0.75 0.27471
Target:  5'- cCCGGaGCAGGUccGCCCCCgCagGGCGGc -3'
miRNA:   3'- -GGCC-CGUUCAuaCGGGGG-Ga-CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 119594 0.72 0.390184
Target:  5'- gCGGGUcuGga-GCCCCCC-GGCGGGg -3'
miRNA:   3'- gGCCCGuuCauaCGGGGGGaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 26259 0.72 0.40668
Target:  5'- gCGGGCAGcccggGCCCCCCgcGGcCGAGa -3'
miRNA:   3'- gGCCCGUUcaua-CGGGGGGa-CC-GCUC- -5'
5766 3' -60.2 NC_001806.1 + 78281 0.71 0.432229
Target:  5'- gCCGcGGCAAGU-UGUccgaaaccgaCCCCCUGGCGc- -3'
miRNA:   3'- -GGC-CCGUUCAuACG----------GGGGGACCGCuc -5'
5766 3' -60.2 NC_001806.1 + 3514 0.71 0.457794
Target:  5'- gCGGGCGgcgucggGGUcGUcGCCCCCCgcgGGgGAGg -3'
miRNA:   3'- gGCCCGU-------UCA-UA-CGGGGGGa--CCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 22635 0.71 0.45869
Target:  5'- aCCGGGCGAGcgcgcgGUGCCCgCCggguacGGCGc- -3'
miRNA:   3'- -GGCCCGUUCa-----UACGGGgGGa-----CCGCuc -5'
5766 3' -60.2 NC_001806.1 + 148412 0.71 0.466796
Target:  5'- gUGGGCGAcagggcccucaccGUGUGCCCCCCcagGGUcAGg -3'
miRNA:   3'- gGCCCGUU-------------CAUACGGGGGGa--CCGcUC- -5'
5766 3' -60.2 NC_001806.1 + 18502 0.71 0.467701
Target:  5'- gCCaGGGCuGGga-GCCCUCCUGGgGGGu -3'
miRNA:   3'- -GG-CCCGuUCauaCGGGGGGACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 22066 0.7 0.476802
Target:  5'- gCCGGGCcccc--GCCCCCggGGCGGGu -3'
miRNA:   3'- -GGCCCGuucauaCGGGGGgaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 76348 0.7 0.476802
Target:  5'- uCCGGGCAGGggucacccUGCCCUgCCcGaGCGAGg -3'
miRNA:   3'- -GGCCCGUUCau------ACGGGG-GGaC-CGCUC- -5'
5766 3' -60.2 NC_001806.1 + 5939 0.7 0.495262
Target:  5'- gCGGGCGGGaccGCCCCaagggGGCGGGg -3'
miRNA:   3'- gGCCCGUUCauaCGGGGgga--CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 6973 0.69 0.552408
Target:  5'- uCUGGGCGgagGGUGUuCCCCCCcgUGGCucucGAGa -3'
miRNA:   3'- -GGCCCGU---UCAUAcGGGGGG--ACCG----CUC- -5'
5766 3' -60.2 NC_001806.1 + 141388 0.69 0.552408
Target:  5'- uCUGGGCGuGUGUGCCCCagagcauaaacaCCaGGcCGGGg -3'
miRNA:   3'- -GGCCCGUuCAUACGGGG------------GGaCC-GCUC- -5'
5766 3' -60.2 NC_001806.1 + 38704 0.69 0.552408
Target:  5'- cCCGGGCGGGgcccccGCCCCaCCUccGGCa-- -3'
miRNA:   3'- -GGCCCGUUCaua---CGGGG-GGA--CCGcuc -5'
5766 3' -60.2 NC_001806.1 + 105229 0.69 0.562141
Target:  5'- uUCGGGCccccGAGUugcugGCCCCCaacGGCGAc -3'
miRNA:   3'- -GGCCCG----UUCAua---CGGGGGga-CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 55528 0.69 0.58174
Target:  5'- cCCGGGgGguuuAGUGgggcgGCCCgaCUUGGCGGGg -3'
miRNA:   3'- -GGCCCgU----UCAUa----CGGGg-GGACCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 29142 0.68 0.591593
Target:  5'- cUCGGGgGGGa--GCCCCCCccGCGAGg -3'
miRNA:   3'- -GGCCCgUUCauaCGGGGGGacCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 144812 0.68 0.591593
Target:  5'- cCCGGGaCGAGgg-GCCCCCgaccgcGGCGGu -3'
miRNA:   3'- -GGCCC-GUUCauaCGGGGGga----CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 10406 0.68 0.601475
Target:  5'- gCGGGagcCGGGgg-GUCCCgCUGGCGGGa -3'
miRNA:   3'- gGCCC---GUUCauaCGGGGgGACCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.