miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 3' -60.2 NC_001806.1 + 2809 0.66 0.757488
Target:  5'- gCUGGGCGGGggcggGCUcgggCCCCgggGGCGuGg -3'
miRNA:   3'- -GGCCCGUUCaua--CGG----GGGGa--CCGCuC- -5'
5766 3' -60.2 NC_001806.1 + 3514 0.71 0.457794
Target:  5'- gCGGGCGgcgucggGGUcGUcGCCCCCCgcgGGgGAGg -3'
miRNA:   3'- gGCCCGU-------UCA-UA-CGGGGGGa--CCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 5939 0.7 0.495262
Target:  5'- gCGGGCGGGaccGCCCCaagggGGCGGGg -3'
miRNA:   3'- gGCCCGUUCauaCGGGGgga--CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 6973 0.69 0.552408
Target:  5'- uCUGGGCGgagGGUGUuCCCCCCcgUGGCucucGAGa -3'
miRNA:   3'- -GGCCCGU---UCAUAcGGGGGG--ACCG----CUC- -5'
5766 3' -60.2 NC_001806.1 + 7495 1.09 0.001237
Target:  5'- cCCGGGCAAGUAUGCCCCCCUGGCGAGc -3'
miRNA:   3'- -GGCCCGUUCAUACGGGGGGACCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 10406 0.68 0.601475
Target:  5'- gCGGGagcCGGGgg-GUCCCgCUGGCGGGa -3'
miRNA:   3'- gGCCC---GUUCauaCGGGGgGACCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 17159 0.66 0.738749
Target:  5'- gCCGGucgcucCAAGg--GCCCCCCcgggaaGGCGGGu -3'
miRNA:   3'- -GGCCc-----GUUCauaCGGGGGGa-----CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 18502 0.71 0.467701
Target:  5'- gCCaGGGCuGGga-GCCCUCCUGGgGGGu -3'
miRNA:   3'- -GG-CCCGuUCauaCGGGGGGACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 21289 0.68 0.641145
Target:  5'- gCGGGaCGGGaggGCCCCCgC-GGCGGGc -3'
miRNA:   3'- gGCCC-GUUCauaCGGGGG-GaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 22066 0.7 0.476802
Target:  5'- gCCGGGCcccc--GCCCCCggGGCGGGu -3'
miRNA:   3'- -GGCCCGuucauaCGGGGGgaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 22119 0.66 0.719661
Target:  5'- cCCGGGCcucuGGgggGCgCCCgaGGCGGa -3'
miRNA:   3'- -GGCCCGu---UCauaCGgGGGgaCCGCUc -5'
5766 3' -60.2 NC_001806.1 + 22635 0.71 0.45869
Target:  5'- aCCGGGCGAGcgcgcgGUGCCCgCCggguacGGCGc- -3'
miRNA:   3'- -GGCCCGUUCa-----UACGGGgGGa-----CCGCuc -5'
5766 3' -60.2 NC_001806.1 + 24908 0.66 0.738749
Target:  5'- gCGGGCuuGGccacGCCCCCgC-GGCGGGa -3'
miRNA:   3'- gGCCCGu-UCaua-CGGGGG-GaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 25859 0.66 0.757488
Target:  5'- cCUGuGGCAGcccggGCCCCCCgcgGGCGc- -3'
miRNA:   3'- -GGC-CCGUUcaua-CGGGGGGa--CCGCuc -5'
5766 3' -60.2 NC_001806.1 + 26259 0.72 0.40668
Target:  5'- gCGGGCAGcccggGCCCCCCgcGGcCGAGa -3'
miRNA:   3'- gGCCCGUUcaua-CGGGGGGa-CC-GCUC- -5'
5766 3' -60.2 NC_001806.1 + 26928 0.66 0.747229
Target:  5'- uCCGGGUGcgccaccuGGUGUcugggccucggccGCCCgCCUGGCGc- -3'
miRNA:   3'- -GGCCCGU--------UCAUA-------------CGGGgGGACCGCuc -5'
5766 3' -60.2 NC_001806.1 + 27864 0.66 0.719661
Target:  5'- cCCGcGGUggGccUGCCuCCCCUGG-GAc -3'
miRNA:   3'- -GGC-CCGuuCauACGG-GGGGACCgCUc -5'
5766 3' -60.2 NC_001806.1 + 28136 0.66 0.739695
Target:  5'- cCCGGaGCGAGUAcccgccggccugaggGCCgCCCCcagcGCGAGg -3'
miRNA:   3'- -GGCC-CGUUCAUa--------------CGG-GGGGac--CGCUC- -5'
5766 3' -60.2 NC_001806.1 + 29142 0.68 0.591593
Target:  5'- cUCGGGgGGGa--GCCCCCCccGCGAGg -3'
miRNA:   3'- -GGCCCgUUCauaCGGGGGGacCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 29494 0.66 0.719661
Target:  5'- aCGGGCAaucagcGGUucGCCCcgcgguaccugaCCCUGGgGGGg -3'
miRNA:   3'- gGCCCGU------UCAuaCGGG------------GGGACCgCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.