miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5766 3' -60.2 NC_001806.1 + 150585 0.66 0.748167
Target:  5'- aCCGGG-AAGUGggcgGCCCggCCCauugGGCGGu -3'
miRNA:   3'- -GGCCCgUUCAUa---CGGG--GGGa---CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 148412 0.71 0.466796
Target:  5'- gUGGGCGAcagggcccucaccGUGUGCCCCCCcagGGUcAGg -3'
miRNA:   3'- gGCCCGUU-------------CAUACGGGGGGa--CCGcUC- -5'
5766 3' -60.2 NC_001806.1 + 147020 0.66 0.738749
Target:  5'- aUGGGCAGGUAgcgcgugagGCCgCCC--GCGGGg -3'
miRNA:   3'- gGCCCGUUCAUa--------CGGgGGGacCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 144812 0.68 0.591593
Target:  5'- cCCGGGaCGAGgg-GCCCCCgaccgcGGCGGu -3'
miRNA:   3'- -GGCCC-GUUCauaCGGGGGga----CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 144573 0.68 0.615343
Target:  5'- uCCGGGCGcguccgGGUGccgcggcucuccggGCCCCCCUGcagcCGGGg -3'
miRNA:   3'- -GGCCCGU------UCAUa-------------CGGGGGGACc---GCUC- -5'
5766 3' -60.2 NC_001806.1 + 141388 0.69 0.552408
Target:  5'- uCUGGGCGuGUGUGCCCCagagcauaaacaCCaGGcCGGGg -3'
miRNA:   3'- -GGCCCGUuCAUACGGGG------------GGaCC-GCUC- -5'
5766 3' -60.2 NC_001806.1 + 135867 0.66 0.748167
Target:  5'- gCCgGGGCGucuaucagGUGCCCCCC-GGCcucgucGAGg -3'
miRNA:   3'- -GG-CCCGUuca-----UACGGGGGGaCCG------CUC- -5'
5766 3' -60.2 NC_001806.1 + 135524 0.75 0.27471
Target:  5'- cCCGGaGCAGGUccGCCCCCgCagGGCGGc -3'
miRNA:   3'- -GGCC-CGUUCAuaCGGGGG-Ga-CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 127749 0.66 0.729245
Target:  5'- cCCGGGCGGGc-UGCCgggugcgggCCUgUGGCGGc -3'
miRNA:   3'- -GGCCCGUUCauACGG---------GGGgACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 121673 0.67 0.690521
Target:  5'- gUGGGcCAAGaugGCCCaguguaCCCUGGCGGu -3'
miRNA:   3'- gGCCC-GUUCauaCGGG------GGGACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 119594 0.72 0.390184
Target:  5'- gCGGGUcuGga-GCCCCCC-GGCGGGg -3'
miRNA:   3'- gGCCCGuuCauaCGGGGGGaCCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 108719 0.67 0.651064
Target:  5'- cUCGGGgGAGaucacCCCCCCggggacGGCGAGa -3'
miRNA:   3'- -GGCCCgUUCauac-GGGGGGa-----CCGCUC- -5'
5766 3' -60.2 NC_001806.1 + 105229 0.69 0.562141
Target:  5'- uUCGGGCccccGAGUugcugGCCCCCaacGGCGAc -3'
miRNA:   3'- -GGCCCG----UUCAua---CGGGGGga-CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 100104 0.66 0.729245
Target:  5'- cCCGcGGCcGGcugaccGCCCgCCUGGCGGu -3'
miRNA:   3'- -GGC-CCGuUCaua---CGGGgGGACCGCUc -5'
5766 3' -60.2 NC_001806.1 + 99775 0.67 0.681689
Target:  5'- gCCGGGUggGUcguuguugguuccgGUCCCCCaccugagGGCGAu -3'
miRNA:   3'- -GGCCCGuuCAua------------CGGGGGGa------CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 99680 0.67 0.688562
Target:  5'- aCGGGgGAGUGggggcaugggacGCCggaCCCUGGgGAGg -3'
miRNA:   3'- gGCCCgUUCAUa-----------CGGg--GGGACCgCUC- -5'
5766 3' -60.2 NC_001806.1 + 91402 0.66 0.75656
Target:  5'- cCCGGGUucgaGGGUcgGCCcaccgcgCCCCUcgucGGCGGa -3'
miRNA:   3'- -GGCCCG----UUCAuaCGG-------GGGGA----CCGCUc -5'
5766 3' -60.2 NC_001806.1 + 88286 0.67 0.700291
Target:  5'- gCC-GGUAGGUcgcucAUGCCCCCCucgaUGGCcAGg -3'
miRNA:   3'- -GGcCCGUUCA-----UACGGGGGG----ACCGcUC- -5'
5766 3' -60.2 NC_001806.1 + 78281 0.71 0.432229
Target:  5'- gCCGcGGCAAGU-UGUccgaaaccgaCCCCCUGGCGc- -3'
miRNA:   3'- -GGC-CCGUUCAuACG----------GGGGGACCGCuc -5'
5766 3' -60.2 NC_001806.1 + 77451 0.66 0.729245
Target:  5'- cCCGGGC--GUccGCCCCaCCcGGCcaaGAGg -3'
miRNA:   3'- -GGCCCGuuCAuaCGGGG-GGaCCG---CUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.