miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5768 5' -59.5 NC_001806.1 + 77933 0.66 0.778866
Target:  5'- gCUGGGCCCagCUGgAAUGGGGgGGUGAc -3'
miRNA:   3'- aGGCCUGGG--GGCgUUGCCCCaCUAUU- -5'
5768 5' -59.5 NC_001806.1 + 85748 0.66 0.760429
Target:  5'- gUCCGGAgCCgCGCGGCcacgucguccggGGGGUGc--- -3'
miRNA:   3'- -AGGCCUgGGgGCGUUG------------CCCCACuauu -5'
5768 5' -59.5 NC_001806.1 + 2453 0.66 0.759495
Target:  5'- -gCGG-CCCCCGgcggcccCGugGGGGUGGg-- -3'
miRNA:   3'- agGCCuGGGGGC-------GUugCCCCACUauu -5'
5768 5' -59.5 NC_001806.1 + 30268 0.66 0.751043
Target:  5'- cCCGG-CCCCCGCGccccggccccCGGGGcgGAg-- -3'
miRNA:   3'- aGGCCuGGGGGCGUu---------GCCCCa-CUauu -5'
5768 5' -59.5 NC_001806.1 + 32992 0.66 0.741556
Target:  5'- cCCGGGCCgggCCGCcACGGGGg----- -3'
miRNA:   3'- aGGCCUGGg--GGCGuUGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 31181 0.66 0.731977
Target:  5'- cCCGacGGCCCCCGCGuCGGaGUGGa-- -3'
miRNA:   3'- aGGC--CUGGGGGCGUuGCCcCACUauu -5'
5768 5' -59.5 NC_001806.1 + 6083 0.66 0.731977
Target:  5'- -gCGGGCCCggGCGGCGGGGggcgGGUc- -3'
miRNA:   3'- agGCCUGGGggCGUUGCCCCa---CUAuu -5'
5768 5' -59.5 NC_001806.1 + 55325 0.67 0.722315
Target:  5'- aCCaGGAguCCCCCGgGugGGgcGGUGAUGu -3'
miRNA:   3'- aGG-CCU--GGGGGCgUugCC--CCACUAUu -5'
5768 5' -59.5 NC_001806.1 + 85412 0.67 0.712579
Target:  5'- cCCGGACCCCacuuACGGGGg----- -3'
miRNA:   3'- aGGCCUGGGGgcguUGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 101482 0.67 0.712579
Target:  5'- gCCGGGCCgggacuggagCCCGCcguuuACGGGGU-AUGAc -3'
miRNA:   3'- aGGCCUGG----------GGGCGu----UGCCCCAcUAUU- -5'
5768 5' -59.5 NC_001806.1 + 30841 0.67 0.711602
Target:  5'- cUCGG-CCCCCGCGcugcuucugggccGCGGGGgccGAg-- -3'
miRNA:   3'- aGGCCuGGGGGCGU-------------UGCCCCa--CUauu -5'
5768 5' -59.5 NC_001806.1 + 55972 0.67 0.702777
Target:  5'- -aCGGACCaCCGgAugGGGGUGu--- -3'
miRNA:   3'- agGCCUGGgGGCgUugCCCCACuauu -5'
5768 5' -59.5 NC_001806.1 + 143603 0.67 0.683011
Target:  5'- cCCGGuCCCCCGUucccCGGGGg----- -3'
miRNA:   3'- aGGCCuGGGGGCGuu--GCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 24917 0.67 0.683011
Target:  5'- gCCacGCCCCCGCGGCGGGaaguuGUGGa-- -3'
miRNA:   3'- aGGccUGGGGGCGUUGCCC-----CACUauu -5'
5768 5' -59.5 NC_001806.1 + 50947 0.68 0.663082
Target:  5'- cCCGGGCCCCCGUGucCGGGa------ -3'
miRNA:   3'- aGGCCUGGGGGCGUu-GCCCcacuauu -5'
5768 5' -59.5 NC_001806.1 + 96376 0.68 0.663082
Target:  5'- gCCaGGgcGCCCCCGCG-CGGGGgcgccGGUGGu -3'
miRNA:   3'- aGG-CC--UGGGGGCGUuGCCCCa----CUAUU- -5'
5768 5' -59.5 NC_001806.1 + 21507 0.68 0.653078
Target:  5'- aCCGGGCCCCgGCc-CGGGGc----- -3'
miRNA:   3'- aGGCCUGGGGgCGuuGCCCCacuauu -5'
5768 5' -59.5 NC_001806.1 + 48283 0.68 0.643058
Target:  5'- cCCGGacgacgacGCCCCCGaagaGGCGGGGcUGGc-- -3'
miRNA:   3'- aGGCC--------UGGGGGCg---UUGCCCC-ACUauu -5'
5768 5' -59.5 NC_001806.1 + 133186 0.68 0.643058
Target:  5'- -gUGGACCCCCaagacgcggauGCGGCuuccGGGGUGAUc- -3'
miRNA:   3'- agGCCUGGGGG-----------CGUUG----CCCCACUAuu -5'
5768 5' -59.5 NC_001806.1 + 21435 0.68 0.630021
Target:  5'- cCCGGACCCCCGCcuuucGagccgacgacgaugACGGGGa----- -3'
miRNA:   3'- aGGCCUGGGGGCG-----U--------------UGCCCCacuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.